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Name : hsdM (TEH_19020) Accession : YP_004887393.1 Strain : Tetragenococcus halophilus NBRC 12172 Genome accession: NC_016052 Putative virulence/resistance : Unknown Product : type I restriction-modification system DNA methylase Function : - COG functional category : V : Defense mechanisms COG ID : COG0286 EC number : 2.1.1.- Position : 1906681 - 1908183 bp Length : 1503 bp Strand : - Note : protein synonym:type I restriction enzyme M protein DNA sequence : ATGACACAAAAATCAAATGCAAACTTAGGTTTTGAAAAAGAACTATGGGCTGCAGCAGATGCGATGCGTAGTCATGTTTC ATCTTCAGATTATCGCAAGGTTGTTGTAGGATTAATATTTTTAAAATATGTATCCGACGCTTTTGAGTATCGCTATCAGG AACTTCTTGAAGAAGGGTATGGTGATGAGGAAGATCGTGATGCTTATATAGAAAAAAATATTTTCTTTGTTCCAGAAGCT GCTCGTTGGAAAAAAATTGCATCAAGTGCTCACTCACCAGAAATTGGTATTGTTCTGGATGAGGCAATGCGAGCAGTTGA AAAAGAAAATAACTCGTTAAAGGGTGTATTACCAATCATTTATGCAAGTCCAGATTTGGACAAGCGGGTATTAGGTAATG TCGTTGATATTTTTACTAATATTAATATGCATGATCAGAGTGAAGAAAAGGATCTGTTAGGTCGTACTTATGAATACTTT ATTGAACAATTTGCTGCTCAAGAAGGCAAAGGCGGGGGAGAATTTTATACACCCTCAAGTATAGTAAAAACGATTGTGGA AGTGCTAAAGCCTTATAAAGGAAGAGTTTATGACCCCGCTTGTGGCTCGGGTGGTATGTTTGTGCAATCAGCTAAATTCG TAAAACAACATAGTGGTAATATTAATAATTTGTCTATTTATGGTGAAGAGTCGAACTCTGATACTTGGAAAATGGCTAAG ATGAATATGGCTATTCGTGGTTTAGAAGCTGATTTTGGTCCTCATCAAGCAGATACATTTTTAAATGATATACATCCAAC TTTAAAAGCTGACTATATTATGGCGAATCCACCATTTAATGTTTCTGATTGGTGGGATGAATCTTTACAAGATGATGTGC GGTGGAAATATGGTACGCCACCTAAAAGTAATGCTAACTATGCATGGATGCAGCATATGATCTCTCATTTAGCACCTAAC GGAAAAATTGGCTTAGTCTTAGCTAATGGCTCTCTATCAACGTTAAATAGTGGCGAGGGGGAGATTCGTAAACGAATTAT TGATGATGATTTAGTTGAAGGAATTGTAGCATTACCATCTAATCTTTTTTATAGCGTGACTATTCCAGCTTGTATATGGT TTATTTCTCGTAATAAAAAACAAAATGGCAAAACAGTATTCATAGATGCACGTAAAATGGGAACATTAGTTGATCGAAAG CACCGAGATTTTAGTAACGATGAGATAAAGAAAATTGCAGATACGTTTGAATCATTTCAGAATGGTGAACTTGAAGATGC AAAAGGTTTTTGTGCAGTGGTAGAAACAGCGGATATAGCAAAACAAGATTATATCTTAACACCTGGTCGTTATGTTGGAA TTGAGGAACAAGAAGAGGATGCTGAACCATTTGATGAAAAAATGGAGCGTTTGACAAGTGAACTATCTGAAATGTTTGAT AAATCGCACGAACTTGAAGACAAGATTCGTAAACGGTTGGAGGAGATTGGTTTTGGATTATAA Protein sequence : MTQKSNANLGFEKELWAAADAMRSHVSSSDYRKVVVGLIFLKYVSDAFEYRYQELLEEGYGDEEDRDAYIEKNIFFVPEA ARWKKIASSAHSPEIGIVLDEAMRAVEKENNSLKGVLPIIYASPDLDKRVLGNVVDIFTNINMHDQSEEKDLLGRTYEYF IEQFAAQEGKGGGEFYTPSSIVKTIVEVLKPYKGRVYDPACGSGGMFVQSAKFVKQHSGNINNLSIYGEESNSDTWKMAK MNMAIRGLEADFGPHQADTFLNDIHPTLKADYIMANPPFNVSDWWDESLQDDVRWKYGTPPKSNANYAWMQHMISHLAPN GKIGLVLANGSLSTLNSGEGEIRKRIIDDDLVEGIVALPSNLFYSVTIPACIWFISRNKKQNGKTVFIDARKMGTLVDRK HRDFSNDEIKKIADTFESFQNGELEDAKGFCAVVETADIAKQDYILTPGRYVGIEEQEEDAEPFDEKMERLTSELSEMFD KSHELEDKIRKRLEEIGFGL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdM | YP_251979.1 | type I restriction-modification system DNA methylase | Not tested | SCCmec | Protein | 3e-136 | 58 |
| hsdM | BAH57701.1 | type I restriction-modification system DNA methylase | Not tested | Type-VII SCCmec | Protein | 2e-136 | 58 |
| hsdM | BAD24842.1 | HsdM protein | Not tested | Type-V SCCmec | Protein | 2e-134 | 57 |
| api49 | CAF28523.1 | putative HsdM-like N-methyl transferase | Not tested | YAPI | Protein | 8e-110 | 46 |
