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Name : hsdR (TEH_18970) Accession : YP_004887388.1 Strain : Tetragenococcus halophilus NBRC 12172 Genome accession: NC_016052 Putative virulence/resistance : Unknown Product : type I restriction-modification system restriction subunit Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : 3.1.21.3 Position : 1900162 - 1903257 bp Length : 3096 bp Strand : - Note : protein synonym:type I restriction enzyme R protein DNA sequence : ATGTCTTTTGCGGAGGATAATTATGAAAATGCGATAATTGAGCTATTTTGCGATAAGTTAGACTACGATTATGTCCCTGG TTGGGATGTAGATCGAGACTATAATGAACCGTTGTATTTAGACGAGTTAATGACGTCTTTAGAGCGAATTAATCCAACAC TTTCCAGAGCGGCCATCGATGAGGCTGTGAATAAATTAAGGCGCTTTGATAATGGAACGCTAGTTCAGATAAATAAGGTG TTTACAAGCTATCTACAGAATGGAATAGAAGTTTCTTATTATGATCGAGGCGAACAGAAGGCTAGTTTGGTTAAATTAGT AGATTTTGAAAATATAAGCAAAAATTCATTTACAGTCATAAATCAGTGGACTATTGATGAGTATAGTAGGAAACGTCCTG ATGTACTAGTATTTCTAAATGGTATTCCAGTAGTAGTATTTGAGCTTAAAAGCCCTTCGCGAGAAGAAACCAATGCATCG GATGCTTATTTACAATTAAAAACTTATCAAAAGGAGATACCTAGTTTATTTAATTATAATGCTTTTTGTGTTATGAGTGA TTTAGCAATTTCAAAAGCTGGAACTATAACTGCTGGTGAAGATCGTTTTATGGAATGGAAAACAATTGATGGTAGTTACG AGAATACACAATATGCTCAATGGGATACTTTAATAGAGGGAATGTTTGAGAAAAAACGTTTTCTTGATATTCTTGAAAAT TTTATTTGTTTTTCCGATGATGCAAAAATCTTAGCAGCTTATCATCAATATTTCGCTGTTCATAAAGCGGTTGTGTCTGC TATAAAAGCAACAGAAACAGACGGACGTGGTGGTGTTTTTTGGCATACGCAGGGTAGTGGGAAGTCTTTGTCAATGGTAT TTTTTACTCATATGATACAAAAGATTCTTAACTTACCCACAGTTGTGATATTAACTGATCGTAATGACTTAGATGAACAA CTTTATGCGCAATTTGCTAAGTGTACTAATTTTTTAAGACAAGAACCAGTTCAAGCAAGTAATCGTGAAGAACTTAAAAA TTTGCTTGATGGTCGCCAAGCAAATGGCATTATCTTTAGTACTATGCAAAAATTTGTAGAATCTGAGGAGCCTTTATCAG AACGAAGAAATATAATTGTTATGGCAGATGAAGCTCATCGTGGGCAATATGGTTTGGATGAGAAAGTAGATACTAAAACA GGTCAAATTAAATTTGGAGCAGCTCGTAGAGTACGTGATAGTTTACCTAATGCCAGCTATATTGGATTTACTGGCACGCC AATTTCTAAAAAGGATAAATCTACTACTGAGGTTTTCGGGAACTATATTGATGTTTATGATATGACACAGGCTGTAGAAG ATGGTGCAACTCGTCCTGTTTATTACGAAAGTCGTGTGATTCATTTAAAACTAGATAATGATGTTTTAAAACATATTGAT GATGAGTACGATCTAATGGCAGAAAGTGCTGACAGCCAAGCAATTGAAAAAAGTAAGCAAGAATTAGGTCGTTTAGATTC TATATTAGGCGCAGAGCAAACAATTAATGCTTTAGTCGATGATATTGTTCAACATTATGAAGAAAATCGTGAACAAGAGT TAACAGGAAAAGCAATGGTTGTGGCTTATTCTCGTTCAATAGCGATAAAAATTTATCATAAGATGTTAGAGAAAAGACCA AGTTGGGCTAAGACAATAGGCGTTGTAATGACTTCTAGCAATAATGATCCTGAAGAATGGCATAATATTATTGGTAATAA AAAGCATAAAGAAGAAATGGCTAAGAAATTTAAAGATAGTGATGATGAATTTAAGATAGCCATTGTCGTTGATATGTGGT TGACTGGATTTGATGTTCCTAGTTTAGCGACAATGTATGTTTATAAACCAATGAGTGGGCACAATTTAATGCAAGCAATT GCTCGAGTGAATCGTGTTTACAAAGAAAAAGAGGGCGGTTTAATTGTTGATTATGTTGGAATTGCTGGTGCTTTAAAACA GGCGATGAACGATTACACTCAAAGAGACAAAAGTAACTTTGGTGATCCTAATGTGGCTGAAACAGCTTTGCCTAAGTTTA AAGAAAAACTAGAAGTTTGTCGTGACATCTTTCATGGTCTTGATTATTCTGCTTTTTTAGACGAAGACGCGACTAATCTT ACCAGGGCAAAAATTATAAGTGGTGGTGTAAATTTTTTATCCAGTATTGATAAAGAAGAACAAAAAGAGGAATATCTAAA ACAAGCTTTATTATTACGACAAGCACTACAACTTTGTCGTTCATTACTAGGAGCAAGAGAAAGGTTTGAAGCAGCATATT TTGAAGCTGTGCGAACTGTATTAACCCGAATTAGTGGTGAGGGTGATAAATTATCGCTGAAAGAAATTAATGGACGCATT AATAGTTTATTAAAAGCCAGTATTAAAAGTGAAGGAGTAGTTAATCTCTTTTCTGACGCTGAAACAGAGTTTTCATTATT TGATCCACAATTTTTGGATGAAATTGCTAATATGAAGGAAAAGAACTTAGCTGTTGAACTTTTGAAAAAGTTAATTGCAG AGCAAATTTCTCTTTATAAACAAACGAATTTAGTCAAATCTAAGAAATTTTCAGAGATGTTATCTAATTCTATGAAGGCA TATTTGAACGGAATGTTGACAAATGAAGAAGTAATTCAAGAATTAAAAGATATGGCGAAAGATATGAAAAATGCTACTGA AGAAGGAACTGATTTAGGTTTAACTGATGAAGAACTGGCATTTTATGACGCTATTACTAAACCGGAAGCTGTTGAGGATT TCATTGAAAACGATCAGTTAGTATCATTGACTCATGAACTTACTGATATGTTACGAAAAAGCCGTACAGTTGATTGGCAA AAGAAAGAATCAGCACGTGCTCATATGCGTCGTAAAGTAAAAAAACTTTTGCGTAAATATAAATATCCACCAGAAGGTAT GGAAGAAGCAATTTCAACAGTAACTCAGCAATGTGAGTTGTGGGTAGATATTGGAAGCTATTATTATGATAGTGCCAGAG AAGTAAATGGACTACCAATGGTGGCAGACAAAGACGAAAACTTTAGAGTTAGATAA Protein sequence : MSFAEDNYENAIIELFCDKLDYDYVPGWDVDRDYNEPLYLDELMTSLERINPTLSRAAIDEAVNKLRRFDNGTLVQINKV FTSYLQNGIEVSYYDRGEQKASLVKLVDFENISKNSFTVINQWTIDEYSRKRPDVLVFLNGIPVVVFELKSPSREETNAS DAYLQLKTYQKEIPSLFNYNAFCVMSDLAISKAGTITAGEDRFMEWKTIDGSYENTQYAQWDTLIEGMFEKKRFLDILEN FICFSDDAKILAAYHQYFAVHKAVVSAIKATETDGRGGVFWHTQGSGKSLSMVFFTHMIQKILNLPTVVILTDRNDLDEQ LYAQFAKCTNFLRQEPVQASNREELKNLLDGRQANGIIFSTMQKFVESEEPLSERRNIIVMADEAHRGQYGLDEKVDTKT GQIKFGAARRVRDSLPNASYIGFTGTPISKKDKSTTEVFGNYIDVYDMTQAVEDGATRPVYYESRVIHLKLDNDVLKHID DEYDLMAESADSQAIEKSKQELGRLDSILGAEQTINALVDDIVQHYEENREQELTGKAMVVAYSRSIAIKIYHKMLEKRP SWAKTIGVVMTSSNNDPEEWHNIIGNKKHKEEMAKKFKDSDDEFKIAIVVDMWLTGFDVPSLATMYVYKPMSGHNLMQAI ARVNRVYKEKEGGLIVDYVGIAGALKQAMNDYTQRDKSNFGDPNVAETALPKFKEKLEVCRDIFHGLDYSAFLDEDATNL TRAKIISGGVNFLSSIDKEEQKEEYLKQALLLRQALQLCRSLLGARERFEAAYFEAVRTVLTRISGEGDKLSLKEINGRI NSLLKASIKSEGVVNLFSDAETEFSLFDPQFLDEIANMKEKNLAVELLKKLIAEQISLYKQTNLVKSKKFSEMLSNSMKA YLNGMLTNEEVIQELKDMAKDMKNATEEGTDLGLTDEELAFYDAITKPEAVEDFIENDQLVSLTHELTDMLRKSRTVDWQ KKESARAHMRRKVKKLLRKYKYPPEGMEEAISTVTQQCELWVDIGSYYYDSAREVNGLPMVADKDENFRVR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 3e-177 | 42 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 9e-175 | 42 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 3e-176 | 42 |
