Gene Information

Name : lysS (OBV_25580)
Accession : YP_004882262.1
Strain : Oscillibacter valericigenes Sjm18-20
Genome accession: NC_016048
Putative virulence/resistance : Virulence
Product : lysyl-tRNA synthetase
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG1190
EC number : 6.1.1.6
Position : 2402640 - 2404142 bp
Length : 1503 bp
Strand : +
Note : protein synonym:lysine--tRNA ligase

DNA sequence :
ATGGCTGAACAGAAGATAAACCAGCAGCCCGAGCAGGATCTGAGTGAGCAGACCCGGATTCGCCGGGAGAAGCTGGCGGC
GCTCCAGGCCGCAGACGAGGATCCGTTCCGGCATACCCGATTCGACTGGGATGCCACCAGCGAGCAGATCAAGTCCAATT
TTGACGCCATGGAGGGCAAGCCTGTGAAGATCGCGGGCCGCCTCATGAGCAAGCGGGGCATGGGCAAGGTCAGCTTCTGC
GATCTGCAGGACCGGGACGGCCGCATCCAACTCTACGCCCGGCAGGACGAGATGGACGAGAATACCTATAAAAAATTCAA
GAAATACGACATCGGCGATATCGTGGGCGTGGATGGCGAGGTGTTTCGCACCCAGCGGGGCGAGATGAGCGTCCGGGCCA
AGGACATCGTGCTTTTGTCTAAGGCCCTGTTGCCCCTGCCGGAGAAGTTCCATGGGCTTACAGACCGTGAGCTGCGCTAC
CGCCAGCGGTATGTGGATCTTATTGTGAATCCGGAGGTCAAGCGGGCTTTTGTGGTCCGGTCCAGGCTTATCAAGCACAT
ACGGAACTTTCTTGACGATCTTGGCTATATTGAGGTGGAAACCCCCGTCCTGAATACCATTTCCGGCGGCGCATCCGCCC
GCCCCTTTGTGACCCATCACAATACGCTGGACATCGATATGTACATGCGCATCGCCACGGAGCTCCCGCTGAAGCGGCTG
ATCGTGGGCGGAATGGACCGGGTCTATGAGATCGGCCGCATCTTCCGCAACGAGGGTATGGACCCCAGACACAATCCGGA
ATTCACCAGCGTGGAGCTCTATCAGGCCTATACCGATTTCCACGGGATGATGGACGTGGCCGAGGGACTGATCTCCTCTG
CTGCAAAGGAGATTCTGGGCACTTATGAAGTCGAGTGGATGGGTGAAAAGATCGATCTGGCCCCCGGCTGGCCCCGCCTG
ACCATGATCGAAGCGGTGAAGCAATACGTGGGCATTGATTTCGGCACCATCTCCGACGACGTAGAGGCCGTTGCCGCCGC
GAAAGCCAAGGGCGTGGAGTTGGCGGACAGCGCCGAGAAAACCTGGGGCAACGCCCTGTACCAGTGCTTTGACCAGCGGG
TGGAGGATCATTTGATCCAGCCCACCTTTATCACCATGTACCCCGTGGAGGTCTCTCCGCTGACGAAGCGCAGCCCTCAG
GACCCCCGTCTTACCGAGCGGTTTGAGTTTTTCATCTACCACAGCGAGATGGGCAACGCCTATTCCGAGCTGAACGATCC
CATTGACCAGCGCCGGCGCTTTGAAAAGCAGGCAGAACTGCGGGAACGGGGCGACGACGAGGCGGAGATGCTGGACGAGG
ATTTCCTCACGGCCATGGAATACGGTATGCCCCCCACCGGCGGCATGGGCATCGGCGTGGATCGGGTTGCCATGATGCTG
ACCAATTCCGATACTATTCGGGACGTGATTCTGTTCCCCACCATGAAGCCGCTGGATGACTGA

Protein sequence :
MAEQKINQQPEQDLSEQTRIRREKLAALQAADEDPFRHTRFDWDATSEQIKSNFDAMEGKPVKIAGRLMSKRGMGKVSFC
DLQDRDGRIQLYARQDEMDENTYKKFKKYDIGDIVGVDGEVFRTQRGEMSVRAKDIVLLSKALLPLPEKFHGLTDRELRY
RQRYVDLIVNPEVKRAFVVRSRLIKHIRNFLDDLGYIEVETPVLNTISGGASARPFVTHHNTLDIDMYMRIATELPLKRL
IVGGMDRVYEIGRIFRNEGMDPRHNPEFTSVELYQAYTDFHGMMDVAEGLISSAAKEILGTYEVEWMGEKIDLAPGWPRL
TMIEAVKQYVGIDFGTISDDVEAVAAAKAKGVELADSAEKTWGNALYQCFDQRVEDHLIQPTFITMYPVEVSPLTKRSPQ
DPRLTERFEFFIYHSEMGNAYSELNDPIDQRRRFEKQAELRERGDDEAEMLDEDFLTAMEYGMPPTGGMGIGVDRVAMML
TNSDTIRDVILFPTMKPLDD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66193.1 putative lysil-tRNA synthetase LysU Not tested PAI III 536 Protein 2e-111 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lysS YP_004882262.1 lysyl-tRNA synthetase VFG1668 Protein 1e-111 49