Gene Information

Name : OBV_13580 (OBV_13580)
Accession : YP_004881062.1
Strain : Oscillibacter valericigenes Sjm18-20
Genome accession: NC_016048
Putative virulence/resistance : Virulence
Product : OmpR family two-component response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1298936 - 1299604 bp
Length : 669 bp
Strand : +
Note : -

DNA sequence :
ATGATCTATCTGCTGGAAGACGACGACAGCATTCGGGATTTTGTGATTTACACGCTGAACAGTCAGGGTATGGAGGCAAG
GGGCTTTGAACGGCCCTCCGCGTTTTGGGAGGCCTGCGCCGAAGCGCTGCCCTCGCTGCTTCTGCTGGATGTGATGCTCC
CGGAGGAGGATGGCCTCGCGATCCTGAAAAAGCTGCGGGCGGACGGAAAGACCGCCCGCCTGCCCATTATTCTCCTGACC
GCCAAGTCCACGGAGTACGACAAGGTGTTGGGGCTGGATGGCGGAGCGGATGACTATGTGGCCAAGCCCTTCGGCATGAT
GGAGCTCCTCTCCCGCATCCGGGCGCTCCTGCGCCGGACGGAGACGGCGGAGGAACAGCTTCGCGCGGGGGAATTGACCG
TGATTCCCGCCAAGCACATCGTCCGCGTGGGAGAGCGGGATGTGGCCCTCACCCAGAAGGAATACGAGATGCTCTGCCTT
TTGATCCGCAACAAGGGAAAGGTCTTTTCCCGGGAGCAGCTCATCGAGAGCGTGTGGGGCTATGCCTTCACCGGTGAGAC
CCGGACCGTGGACGTCCATGTCCGCACCCTGCGCCAAAAGCTGGGAGACGCGGGGGAGTGCATCGAGACCGTACGGGGCT
ATGGCTATAAAATCGGAGAGACGGTATGA

Protein sequence :
MIYLLEDDDSIRDFVIYTLNSQGMEARGFERPSAFWEACAEALPSLLLLDVMLPEEDGLAILKKLRADGKTARLPIILLT
AKSTEYDKVLGLDGGADDYVAKPFGMMELLSRIRALLRRTETAEEQLRAGELTVIPAKHIVRVGERDVALTQKEYEMLCL
LIRNKGKVFSREQLIESVWGYAFTGETRTVDVHVRTLRQKLGDAGECIETVRGYGYKIGETV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-23 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
OBV_13580 YP_004881062.1 OmpR family two-component response regulator NC_007622.3794948.p0 Protein 2e-28 48
OBV_13580 YP_004881062.1 OmpR family two-component response regulator NC_003923.1003417.p0 Protein 2e-28 48
OBV_13580 YP_004881062.1 OmpR family two-component response regulator NC_013450.8614146.p0 Protein 2e-28 48
OBV_13580 YP_004881062.1 OmpR family two-component response regulator NC_002951.3238224.p0 Protein 2e-28 48
OBV_13580 YP_004881062.1 OmpR family two-component response regulator NC_007793.3914065.p0 Protein 2e-28 48
OBV_13580 YP_004881062.1 OmpR family two-component response regulator NC_002758.1121390.p0 Protein 2e-28 48
OBV_13580 YP_004881062.1 OmpR family two-component response regulator NC_010079.5776364.p0 Protein 2e-28 48
OBV_13580 YP_004881062.1 OmpR family two-component response regulator NC_002952.2859858.p0 Protein 2e-28 48
OBV_13580 YP_004881062.1 OmpR family two-component response regulator HE999704.1.gene1528. Protein 1e-19 43
OBV_13580 YP_004881062.1 OmpR family two-component response regulator BAC0347 Protein 3e-25 42
OBV_13580 YP_004881062.1 OmpR family two-component response regulator BAC0125 Protein 4e-23 41
OBV_13580 YP_004881062.1 OmpR family two-component response regulator BAC0197 Protein 2e-24 41
OBV_13580 YP_004881062.1 OmpR family two-component response regulator BAC0308 Protein 6e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
OBV_13580 YP_004881062.1 OmpR family two-component response regulator VFG1390 Protein 1e-28 42
OBV_13580 YP_004881062.1 OmpR family two-component response regulator VFG1389 Protein 2e-27 42
OBV_13580 YP_004881062.1 OmpR family two-component response regulator VFG0473 Protein 5e-26 41
OBV_13580 YP_004881062.1 OmpR family two-component response regulator VFG0596 Protein 8e-24 41