Gene Information

Name : GYO_4454 (GYO_4454)
Accession : YP_004879643.1
Strain : Bacillus subtilis TU-B-10
Genome accession: NC_016047
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein YycF
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4153124 - 4153831 bp
Length : 708 bp
Strand : -
Note : -

DNA sequence : 
ATGGATAAAAAGATCCTTGTAGTGGATGATGAAAAACCGATTGCAGATATATTGGAATTTAACTTAAGAAAAGAAGGCTA
TGAAGTGCACTGTGCCCACGACGGAAACGAAGCCGTTGAAATGGTAGAAGAGCTTCAGCCTGATTTAATTCTTTTAGATA
TCATGCTTCCTAATAAAGACGGTGTTGAAGTGTGCCGTGAAGTCAGAAAGAAATACGATATGCCGATCATTATGCTGACG
GCTAAGGATTCAGAAATTGACAAGGTCATCGGGCTTGAAATCGGTGCTGATGACTATGTCACAAAACCTTTCAGCACACG
CGAGCTCCTGGCACGTGTAAAAGCGAACCTGCGCCGCCAGCTGACAACAGCGCCGGCGGAGGAAGAGCCGTCCTCTAACG
AGATTCATATCGGCTCTCTCGTCATCTTCCCTGACGCGTACGTCGTATCAAAAAGAGATGAAACAATTGAGTTGACTCAT
CGTGAGTTCGAATTGCTTCATTATTTAGCAAAACATATCGGACAAGTGATGACCCGTGAACATTTGCTTCAAACTGTTTG
GGGCTATGATTACTTCGGCGATGTCAGAACGGTTGACGTAACAGTCCGCCGGCTTCGTGAAAAAATCGAGGACAACCCGA
GCCATCCAAATTGGATTGTCACACGCCGCGGCGTAGGTTATTACTTGAGAAACCCAGAACAGGACTAA

Protein sequence : 
MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLT
AKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLTTAPAEEEPSSNEIHIGSLVIFPDAYVVSKRDETIELTH
REFELLHYLAKHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPEQD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 8e-32 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 1e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF NC_012469.1.7685629. Protein 2e-64 68
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF NC_002951.3237708.p0 Protein 4e-52 55
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF NC_003923.1003749.p0 Protein 4e-52 55
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF NC_002758.1121668.p0 Protein 4e-52 55
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF NC_009641.5332272.p0 Protein 4e-52 55
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF NC_013450.8614421.p0 Protein 4e-52 55
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF NC_007793.3914279.p0 Protein 4e-52 55
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF NC_002952.2859905.p0 Protein 4e-52 55
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF NC_007622.3794472.p0 Protein 3e-52 55
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF NC_002745.1124361.p0 Protein 4e-52 55
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF NC_009782.5559369.p0 Protein 4e-52 55
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF HE999704.1.gene2815. Protein 2e-48 54
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF AE016830.1.gene1681. Protein 3e-46 49
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF NC_012469.1.7686381. Protein 1e-43 48
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF FJ349556.1.orf0.gene Protein 1e-40 47
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF AM180355.1.gene1830. Protein 3e-38 46
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF AE000516.2.gene3505. Protein 3e-37 45
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF AF155139.2.orf0.gene Protein 2e-36 45
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF HE999704.1.gene1528. Protein 3e-32 44
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF NC_005054.2598277.p0 Protein 1e-36 43
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF NC_014475.1.orf0.gen Protein 1e-36 43
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF DQ212986.1.gene4.p01 Protein 3e-36 43
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF NC_003923.1003417.p0 Protein 5e-34 43
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF NC_013450.8614146.p0 Protein 5e-34 43
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF NC_002951.3238224.p0 Protein 5e-34 43
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF NC_007793.3914065.p0 Protein 5e-34 43
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF NC_002758.1121390.p0 Protein 5e-34 43
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF NC_010079.5776364.p0 Protein 5e-34 43
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF NC_002952.2859858.p0 Protein 5e-34 43
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF NC_007622.3794948.p0 Protein 5e-34 43
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF AE015929.1.gene1106. Protein 9e-31 43
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF NC_002695.1.916589.p Protein 2e-29 43
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF BAC0039 Protein 2e-29 43
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF CP000034.1.gene2186. Protein 2e-29 43
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF AF130997.1.orf0.gene Protein 8e-36 42
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF CP001918.1.gene5135. Protein 2e-27 42
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF CP001138.1.gene2239. Protein 4e-28 42
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF BAC0596 Protein 4e-28 42
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF CP001918.1.gene3444. Protein 1e-28 42
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF CP000034.1.gene3834. Protein 2e-31 41
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF NC_002695.1.915041.p Protein 2e-31 41
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF AF162694.1.orf4.gene Protein 1e-32 41
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF CP004022.1.gene3215. Protein 6e-35 41
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF CP004022.1.gene1676. Protein 1e-28 41
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF CP000647.1.gene2531. Protein 1e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF VFG1389 Protein 9e-29 45
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF VFG1390 Protein 1e-35 42
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF VFG1563 Protein 5e-32 42
GYO_4454 YP_004879643.1 transcriptional regulatory protein YycF VFG1702 Protein 4e-32 41