Gene Information

Name : GNIT_0447 (GNIT_0447)
Accession : YP_004870594.1
Strain : Glaciecola nitratireducens FR1064
Genome accession: NC_016041
Putative virulence/resistance : Virulence
Product : lysophospholipase L1 biosynthesis ABC transporter ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 499033 - 499692 bp
Length : 660 bp
Strand : -
Note : -

DNA sequence : 
ATGGAGTATGGCCAAGAAGAAGCGCCGTTGCGTGTTCTCGATAATTTGAACTTTAATATGGAACGCGGCGATACCGTTGC
AATTGTGGGCCCTTCAGGTTCAGGAAAAACGACACTACTGCAACTTCTAGCTGCGCTGGAGCAACCCACACAAGGCAAGA
TTAACCTAGACAGTCAAACGCTATCAGCACTATCCCCTGATGAACTAGCTGACTTTAGACGCGACAATATGGGCATTGTT
TTCCAATCCTTTCATCTAATAGACAGTTTAAGCGCACTCGCGAATGCGGCGCTGCCTTTAGATATCGCAGGCAAGCCCAA
TGCTACACAGCTAGCTAAAACCATGCTTGACCGTGTGGGGCTGAAAGACAGAGTTCAGCATTACCCACAACAACTATCTG
GCGGCGAGCAACAGCGTGTTGCCATCGCACGCGCACTTGTGCATCAACCTAGACTCATTCTCGCCGACGAACCCACCGGC
AACTTAGATGAGAAAACCGGTAAGCGCGTTGCCGACTTGTTGTTTGAACTACACGCTCAATCGCAATCGACCCTAGTAAT
TGTTACCCATGATATGCGCCTAGCTAAGCGCTGCAAAAGGCTATTTTGGCTAGAATCTGGCAAACTTCGTGTTGAGGAAA
ATAGTGAACTTTCAGTGTAA

Protein sequence : 
MEYGQEEAPLRVLDNLNFNMERGDTVAIVGPSGSGKTTLLQLLAALEQPTQGKINLDSQTLSALSPDELADFRRDNMGIV
FQSFHLIDSLSALANAALPLDIAGKPNATQLAKTMLDRVGLKDRVQHYPQQLSGGEQQRVAIARALVHQPRLILADEPTG
NLDEKTGKRVADLLFELHAQSQSTLVIVTHDMRLAKRCKRLFWLESGKLRVEENSELSV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-25 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-25 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-25 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-25 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GNIT_0447 YP_004870594.1 lysophospholipase L1 biosynthesis ABC transporter ATPase NC_008702.1.4606598. Protein 2e-29 46
GNIT_0447 YP_004870594.1 lysophospholipase L1 biosynthesis ABC transporter ATPase NC_012469.1.7686878. Protein 2e-29 46
GNIT_0447 YP_004870594.1 lysophospholipase L1 biosynthesis ABC transporter ATPase CP001581.1.gene798.p Protein 7e-28 43
GNIT_0447 YP_004870594.1 lysophospholipase L1 biosynthesis ABC transporter ATPase CP001581.1.gene598.p Protein 5e-28 41
GNIT_0447 YP_004870594.1 lysophospholipase L1 biosynthesis ABC transporter ATPase NC_012469.1.7686946. Protein 3e-20 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GNIT_0447 YP_004870594.1 lysophospholipase L1 biosynthesis ABC transporter ATPase VFG2059 Protein 2e-14 41