|
Name : gspD (GNIT_3467) Accession : YP_004873554.1 Strain : Glaciecola nitratireducens FR1064 Genome accession: NC_016041 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 3891337 - 3893409 bp Length : 2073 bp Strand : + Note : - DNA sequence : ATGAGGCTGGACAGCCAAAGAATCACAAGCTTTCGTCAATTTTTAAAGACATCTGTTATTGCGGCAAGTATCGCCGCAGG CTTATTTGCCACAGCGGGAGCATACGCTACAGAATATAGCCCCAACTTTAAAAATACCGAAATAACCGAATTCATCAATA TCGTCGGTAAAAATCTAAAACGAACTATTATCGTGGATCCCAACGTACGCGGTAAAATTACTGTTCGTAGCTACGACTTA TTAACCGAAGAACAATATTATCAATTCTTCCTGAACGTGCTGCAAGTGTATGACTTTGCTGTTGTTGAGATGCCCAGCGG CATTCTAAAAATAGTCCGTTCGAAAGATGCGAAAACGTCAAATATCCCTGTTGTCGACGGCGATATGCTTAACGGCGATG AAATGATTACGCGTGTGCTTCCAGTCTATAATGTTCCAGTGCGCGAGCTTGCTCCAATTCTTCGTCAATTGAATGACCAA GCGGGCGGCGGTAACGTAGTGAGTCACGACCCTTCAAACGTTATGATGTTGACCGGCCGCGCAGCGGTGGTAAATCGTCT GGTCAAAATCATAGAAAGCGTTGACCGCGCCGGCGATGAAGAAGTTGAGGTTATTAAACTCAAGCACGCTTCGGCAACGG AAATGGTGCGAATTATCGAAAGCATCAACAAAAACCAAGGCACGGCCGGTGCCGGTAAATCAGAACCGCGCGTAGTGGCA GATGATCGCACTAACAGCATCATAGTGAGCGGCGATGTGAAAGCACGTCAGCGCTTAATTAACCTTGTTACGCGCATGGA CCAAGAGCTAGAAACTAACGGCAACACGCGAGTCATTAACCTAAACTACGCGAAAGCAGAAGATCTAGTCAAAGTGCTGC AGGGCGTCAGCGCTGGCATTCAGGCTGAAAGTCAAGGCGGCGCGACTACACAGCGCCGTGGTGGAAATAGTAACCGCGAC ATCAGTATCGATTCGCACGAAGACTCTAACTCCTTGGTGATCACCGCTGAACCCGACATGATGCGCTCGCTTGAAGACGT TATTCGTCAGCTTGATGTGCGTCGCGCGCAAGTGCAGGTTGAAGCGATTATCGTGGAAGTGTTCGAAGGCGACGGCACGA CTTTAGGTGTGCAGTGGGTTTCTGAAGAAGGCGGCGGAACGCAATTTACGAATGGTGTCATTGGTGTTGGTTCATTGGGT GTTGCGTTGCGTGAAGCTGAAGATACCGTTATTACCGGAACAGCAATAGGCCCTAATGGCGACGTTGTACCTACCACAAC GACGAGTGAAGGCAACCTAACCCCACTCGCTGCCCTGCTCGGCGGCGCTAATGGTCTCATTGCTGGTGTCATTAGAAACG GCTGGGGCGCAGTTGTGCAAGCGGTCAGCACCGACACTAACTCAAACATATTAGCAACTCCGCACTTAACCACCATGGAT AACGAAGAAGCCTTCTTTATCGTCGGTCAAGAAGTGCCGATTATTACTGGCTCTACAACTGGCTCGAACAACGGCAACCC GTTCCAGCAGGTTGAACGACAAGACGTAGGTATCAAACTCAAAGTCACACCACAAATCAACGAAGGCGACGCGATACAAC TGCAAATTGAACAAGAAGTATCGAGTGTATCAGGCGCAACCTCGGTGGATATTTCCATCAATAAACGCGAAATTAAAACT ACGGTCATTGTGGATGACGGCGGCACAATCGTATTAGGTGGCTTGATTGATGAAGACGTGCAAGAAAGTGTATCTAAGGT ACCGCTGTTAGGCGATATCCCATTTGTTGGTCATTTGTTTAAATCGACAACAACAAGCAAGCGCAAGCGTAATTTGATGG TATTTATCCGTCCTACAATCATCCGTGATGGCATTACCTCAAACAAAATCAGCTTACGTAAATACAACTACATTCGAGCG CAACAGTTGAAGCGTCAGTCTGAAGGGATCCCATTAATGCCGTTTAAAGAAGGGCCTTCGTTGCCGGAATGGAATGATGC CATGGTATTACCACCTTCGTTTGATGAATACTTGCTCGACAAAGAGAAGAAAGCGAAAGAAGGTAACGATTAG Protein sequence : MRLDSQRITSFRQFLKTSVIAASIAAGLFATAGAYATEYSPNFKNTEITEFINIVGKNLKRTIIVDPNVRGKITVRSYDL LTEEQYYQFFLNVLQVYDFAVVEMPSGILKIVRSKDAKTSNIPVVDGDMLNGDEMITRVLPVYNVPVRELAPILRQLNDQ AGGGNVVSHDPSNVMMLTGRAAVVNRLVKIIESVDRAGDEEVEVIKLKHASATEMVRIIESINKNQGTAGAGKSEPRVVA DDRTNSIIVSGDVKARQRLINLVTRMDQELETNGNTRVINLNYAKAEDLVKVLQGVSAGIQAESQGGATTQRRGGNSNRD ISIDSHEDSNSLVITAEPDMMRSLEDVIRQLDVRRAQVQVEAIIVEVFEGDGTTLGVQWVSEEGGGTQFTNGVIGVGSLG VALREAEDTVITGTAIGPNGDVVPTTTTSEGNLTPLAALLGGANGLIAGVIRNGWGAVVQAVSTDTNSNILATPHLTTMD NEEAFFIVGQEVPIITGSTTGSNNGNPFQQVERQDVGIKLKVTPQINEGDAIQLQIEQEVSSVSGATSVDISINKREIKT TVIVDDGGTIVLGGLIDEDVQESVSKVPLLGDIPFVGHLFKSTTTSKRKRNLMVFIRPTIIRDGITSNKISLRKYNYIRA QQLKRQSEGIPLMPFKEGPSLPEWNDAMVLPPSFDEYLLDKEKKAKEGND |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 7e-150 | 52 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 7e-157 | 52 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspD | YP_004873554.1 | general secretion pathway protein D | VFG2047 | Protein | 5e-148 | 52 |
