Gene Information

Name : GNIT_2959 (GNIT_2959)
Accession : YP_004873049.1
Strain : Glaciecola nitratireducens FR1064
Genome accession: NC_016041
Putative virulence/resistance : Resistance
Product : sigma 54 interacting domain-containing protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 3278158 - 3278889 bp
Length : 732 bp
Strand : -
Note : -

DNA sequence : 
ATGTCTGACGCGGCACCCATGCTCAAACCGACACCCACATTGTCAGCACACAATCTGGTCAAAACGTATGTTACCGGTGA
CGTTGAAGTCAACGCTCTGCGCGGTGTGGATTTTGAACTTTATCCAAATGAAATGGTGGTGTTGTTAGGCGCATCTGGGA
GCGGTAAATCAACCTTACTCAACATCCTCGGTGGACTAGACTTGCCAAGCTCCGGTGAGGTTTTTTATGGTGAGCAAAAT
ATAAGTCATGCAGACGAGCGAACGCTCACGCTTTTCCGGCGCGACCACGTAGGTTTTGTTTTTCAATTTTATAACCTTAT
ACCCAGCCTTACTGCTTATGAAAATGTGGCCTTAGTCACTGAAATTGCACCTAATCCTTTACCCCCTGAAGAGGCTCTTA
AATTGGTCAAATTAGGTGATAGGATGCATCACTTTCCTTCGCAGTTGTCCGGTGGCGAGCAGCAACGGGTTGCAATCGCC
AGAGCCATCGCCAAACAGCCTGATATCTTGTTATGTGACGAACCCACAGGGGCTTTGGATAAACAAACTGGGATATTAGT
TATGGAAGCTATCGAGAACATTAATCGTCAGCTAGGAACCGCCACAGCCGTTATTACCCACAATACGGTTATCGGTGCAA
TGGCAGATCGTATTGTCAATATTTCTGATGGTGTGATATCAGATATTGTCATCAATCAATCTCGCCAGCCAGCGAAAAAC
TTGGTGTGGTAG

Protein sequence : 
MSDAAPMLKPTPTLSAHNLVKTYVTGDVEVNALRGVDFELYPNEMVVLLGASGSGKSTLLNILGGLDLPSSGEVFYGEQN
ISHADERTLTLFRRDHVGFVFQFYNLIPSLTAYENVALVTEIAPNPLPPEEALKLVKLGDRMHHFPSQLSGGEQQRVAIA
RAIAKQPDILLCDEPTGALDKQTGILVMEAIENINRQLGTATAVITHNTVIGAMADRIVNISDGVISDIVINQSRQPAKN
LVW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-31 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-31 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GNIT_2959 YP_004873049.1 sigma 54 interacting domain-containing protein NC_012469.1.7685735. Protein 9e-53 50
GNIT_2959 YP_004873049.1 sigma 54 interacting domain-containing protein CP001581.1.gene798.p Protein 1e-40 43
GNIT_2959 YP_004873049.1 sigma 54 interacting domain-containing protein NC_012469.1.7686878. Protein 1e-35 43
GNIT_2959 YP_004873049.1 sigma 54 interacting domain-containing protein CP001581.1.gene598.p Protein 1e-37 42
GNIT_2959 YP_004873049.1 sigma 54 interacting domain-containing protein NC_008702.1.4606598. Protein 3e-28 42