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Name : lysS (GNIT_2283) Accession : YP_004872377.1 Strain : Glaciecola nitratireducens FR1064 Genome accession: NC_016041 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 2525620 - 2527161 bp Length : 1542 bp Strand : - Note : - DNA sequence : ATGAGTGACCATCAGCAAGATGAAAATAAATTGATTGCCGAGCGTCGTGGCAAGTTAGCGCATATACGCGAAAACTGTGC TTCGAACGGCTTCCCGAATCAATTTAACCGTAAACACTATGCACAAGACTTGCAGACTACCTTTGGTGAAATAGACAAAG AGACCTTAGCGGCGCAAGCAAACAAGGTCAGTATTGCGGGTCGTGTGATGGCTAAACGTGGTCCATTTTTGCTACTGCAG GACATGAGTGGACAAATCCAGTCGTATGCTTCAAAAGATGCACAAAAAGACATCAAAGCTAAATATGGTTCTTTAGATAT TGGCGATATTATTGGCGTCAGCGGTGACCTGCATAAATCAGGAAAAGGTGATTTATATGTGGATATGGCTGACTATCAAT TGTTAACTAAAGCGCTGCGCCCGCTACCTGAAAAATTTCATGGCTTAGCGGACCAAGAGACAAAGTATCGTCAACGTTAT GTTGATTTGATCACTAATCCTGACACACGCAACACATTTAAAATTCGTAGCCAAATTGTCAGTGGGATTCGTAATTTCCT AACAGAACGTCAGTTTATGGAAGTTGAAACACCGATGCTGCAAGTTATCCCTGGCGGCGCAACGGCAAAGCCATTCACAA CACATCACAATGCCTTAGATATCGGGATGTACTTGCGAATCGCGCCAGAATTGTATCTAAAGCGTTTGGTTGTTGGTGGT TTCGAACGTGTATTTGAAATCAACCGCAACTTCCGTAACGAAGGTTTGTCAACGCGTCATAATCCTGAATTTACGATGCT AGAGTTTTATCAAGCCTACGCAGACTACAATGATTTGATGAACTTAACGGAAGAAATGCTGCGCTACCTTGCTGATACTG TTATGGGTACCTCGGTAATCACCAATACCGTTAAAAATGCTGAAGGTGAGGTTGTTGAAACAAAAGAATACGATTTTGCT CAGCCTTTCCAGCGTTTGAGTATGGGAGATGCGGTTCTTAAATATTGGCCTGATGCTAACGTAGCTGCGATTAATGATCC TGAGAATCACTTACCAGAGCTGAAAGCGATGGCGAAGCAACTGCACATAAAAGAGCCAGAAGTTGACGGTATCTGGGGTG CAGGTAAGTACCTTTGCGAAATATTTGAAGCGACCGCCGAAGAACAACTTGATCAACCGACATTCATCACACAATACCCG TGGGAAGTTTCTCCATTAGCACGCCGCAATGATGACAATCCATTTGTAACTGATCGGTTTGAGTTTTTTGTTGGTGGTCG AGAGTTAGCGAACGGTTTCTCGGAGCTTAATGACTCTGAAGACCAAGCGAGTCGCTTTAAAAAGCAAGTACAAGAAAAAG ATGCCGGTGATGATGAAGCAATGCATTTTGACGAAGACTATATTACTGCCTTGGAATATGGCTTACCGCCGACCGCAGGA GAGGGCATAGGCATTGATAGATTGGTGATGTTGTTTACGGACAGTCCGACCATCAAAGATGTGATTTTGTTTCCACACAT GAAGCCAGTATCACACGACTAA Protein sequence : MSDHQQDENKLIAERRGKLAHIRENCASNGFPNQFNRKHYAQDLQTTFGEIDKETLAAQANKVSIAGRVMAKRGPFLLLQ DMSGQIQSYASKDAQKDIKAKYGSLDIGDIIGVSGDLHKSGKGDLYVDMADYQLLTKALRPLPEKFHGLADQETKYRQRY VDLITNPDTRNTFKIRSQIVSGIRNFLTERQFMEVETPMLQVIPGGATAKPFTTHHNALDIGMYLRIAPELYLKRLVVGG FERVFEINRNFRNEGLSTRHNPEFTMLEFYQAYADYNDLMNLTEEMLRYLADTVMGTSVITNTVKNAEGEVVETKEYDFA QPFQRLSMGDAVLKYWPDANVAAINDPENHLPELKAMAKQLHIKEPEVDGIWGAGKYLCEIFEATAEEQLDQPTFITQYP WEVSPLARRNDDNPFVTDRFEFFVGGRELANGFSELNDSEDQASRFKKQVQEKDAGDDEAMHFDEDYITALEYGLPPTAG EGIGIDRLVMLFTDSPTIKDVILFPHMKPVSHD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 3e-130 | 54 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_004872377.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-130 | 54 |
