Gene Information

Name : kdsB (GNIT_2049)
Accession : YP_004872151.1
Strain : Glaciecola nitratireducens FR1064
Genome accession: NC_016041
Putative virulence/resistance : Virulence
Product : 3-deoxy-D-manno-octulosonate cytidylyltransferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1212
EC number : 2.7.7.38
Position : 2270948 - 2271703 bp
Length : 756 bp
Strand : -
Note : -

DNA sequence :
TTGAAATTTATCGTCGTCATTCCTGCGAGATACGGTTCAACCCGTTTTCCGGGGAAGCCATTGGCTTTGATCAAAGGTAA
ACCGATGATCCAGCATGTTGTTGAACGCGCAATCGAAGCTGGCGCGCAAAAAGTGATCGTTGCTACCGATGACGAACGCA
TTGCTAACGTTGTTAGTGAGTTCGGTGCAGACGTTTGTATGACTCGTAACGACCATGAATCGGGCACAACTAGGATAGCT
GAAGTGTTAGCAACGCTGGCATACCCTGATGACACTATCGTAGTGAACGTTCAAGGCGATGAGCCTTTCATTCCTGCAAT
CAATATTCAACAAGTTGCGCAGAACCTGCACGATAACTCACAGATACCGATGGCAACCTTAGGCTATCCAATTAGCGATA
TTGAGGATATTTTCAACCCAAATGTTGTTAAGGTTGTCACAAATAGCCACAAACATGCGATGTATTTTTCTCGAGCAGCC
ATGCCATTCGATCGTGACGAGTTTAGCAATAAATCAGTCGATAACATTTGTATGGATGATTTAAGCTCAGTGTATTTGCG
TCATATCGGTATTTATGGATATAGAGCGGGGTTTGTTAAGCAGTACGAAAACATGTCTGCAACGCAGTTAGAGCGAACCG
AGTCTTTAGAACAATTAAGAGTACTTTGGCATGGACACGTCATTCACGTTGATGTGGCAAAACACGCTCCACCGCACGGC
GTGGATACGCCTGAAGACTTGCAGCGCTTTCAATAG

Protein sequence :
MKFIVVIPARYGSTRFPGKPLALIKGKPMIQHVVERAIEAGAQKVIVATDDERIANVVSEFGADVCMTRNDHESGTTRIA
EVLATLAYPDDTIVVNVQGDEPFIPAINIQQVAQNLHDNSQIPMATLGYPISDIEDIFNPNVVKVVTNSHKHAMYFSRAA
MPFDRDEFSNKSVDNICMDDLSSVYLRHIGIYGYRAGFVKQYENMSATQLERTESLEQLRVLWHGHVIHVDVAKHAPPHG
VDTPEDLQRFQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsU YP_854332.1 3-deoxy-manno-octulosonate cytidylyltransferase Not tested PAI I APEC-O1 Protein 2e-43 45
kpsU AAZ04469.1 CMP-KDO synthetase Virulence PAI I APEC-O1 Protein 1e-43 45
kpsU CAE85213.1 KpsU protein Virulence PAI V 536 Protein 9e-43 44