Gene Information

Name : GNIT_1611 (GNIT_1611)
Accession : YP_004871721.1
Strain : Glaciecola nitratireducens FR1064
Genome accession: NC_016041
Putative virulence/resistance : Unknown
Product : site-specific recombinase, phage integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1771472 - 1772725 bp
Length : 1254 bp
Strand : -
Note : -

DNA sequence : 
ATGCCCAGAGTAGCAACACCATTAACAGATTCAAAGATACAGAGTGCCAAGCCACGTGAGAAAGATTATAAGCTCAGTGA
TGGCAGAGGATTACATTTGCGCGTTCGAGCAGGTGGCACAAAGGATTGGATATTTAGGTACCAAGTGCCTTTTAGTGGCA
CACGCAAAGATATGAGTTTTGGTATTTATCCAACCGTAGGATTAGCTGATGCTAGAGAAAAACGAAAAAATGCACACAAG
CTATTATCAAAGGACATCGACCCAAAATCACATAAAGCAGAAGTTAAGCGCACGGCAACTCAAGATAAAGCTAACAGTTT
TACTTGCATCACCCTTGATTGGCTGAGAGTCAAATCAACAAAAGTAACGGCTAAATACGCGGTTCAAATTGAAGCATCGC
TCAGGAACCATGTATTTCCTCATATCGGAAAACGCCCTGTTAAAGAACTAACACCTTCTGAAGTGATTGAGTTTTTGCGG
CCTATCGAAGCCAAAGGAAGTAAAGAAACAATCAAACGACTTTGTCAGCGCATTAACGAAGTCATGGACTATGCTGTCAA
TACAGGGCTGATCGACATTAACCCGTTGTCTAAGATCCACAAGGCATTTCTTTCACCCAATCCAAAGCACTTGCCAACAA
TAAAACCTGAAGAACTACCTCAACTAATGCAAAGCTTGAGCACTGCTAGCATTAAACTTGTCACACGTACGCTGATCGAA
TGGCAATTACACACAATGGTTAGACCGAGCGAAGCAGCAACTGCTAAATGGAGTGAGATCGACCTTGATAACCAAACATG
GACAATCCCCGCTGATAAGATGAAAAAAAAGAACAATGGCGATCACGTTGTACCACTAACGCCACAGACACTCGCCCTAC
TCGATTTTATAAAACCGATTAGTGGTCACAGAGAGTTTATCTTTCCTGCTGATCGAAACCCTAAAACGCATACAAACACT
CAGACGGCAAATATGGCCTTAAAGCGAATGGGTTATCACAAAACATTAGTAGCGCATGGGTTGCGGTCCCTGGCTAGCAC
GACGCTGAATGAGCGAGCGTTCGCACCTGACGTCATCGAGGCATGCTTGGCACACATAGACAGTAATAGCGTCAGACGCG
CTTACAATCGCACTGATTATTTGGAGAGACGCAGAAAAGTTATGAACTGGTGGTCGGCTCACGTTGAACAGGCTGCTACT
GGCAATATGAGTTTAGCGAATACCAATAAAACATTGAGATTGATTAATAATTAA

Protein sequence : 
MPRVATPLTDSKIQSAKPREKDYKLSDGRGLHLRVRAGGTKDWIFRYQVPFSGTRKDMSFGIYPTVGLADAREKRKNAHK
LLSKDIDPKSHKAEVKRTATQDKANSFTCITLDWLRVKSTKVTAKYAVQIEASLRNHVFPHIGKRPVKELTPSEVIEFLR
PIEAKGSKETIKRLCQRINEVMDYAVNTGLIDINPLSKIHKAFLSPNPKHLPTIKPEELPQLMQSLSTASIKLVTRTLIE
WQLHTMVRPSEAATAKWSEIDLDNQTWTIPADKMKKKNNGDHVVPLTPQTLALLDFIKPISGHREFIFPADRNPKTHTNT
QTANMALKRMGYHKTLVAHGLRSLASTTLNERAFAPDVIEACLAHIDSNSVRRAYNRTDYLERRRKVMNWWSAHVEQAAT
GNMSLANTNKTLRLINN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int AAK20803.1 integrase Not tested VPI Protein 1e-112 53
unnamed AAA82714.1 integrase Not tested VPI Protein 1e-112 53
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 1e-112 53
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 1e-112 53
int AAK20773.1 integrase Not tested VPI Protein 1e-112 53
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 4e-108 51
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 1e-95 49
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 1e-95 49
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 1e-95 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GNIT_1611 YP_004871721.1 site-specific recombinase, phage integrase family protein VFG1092 Protein 6e-96 49