|
Name : clpB (GNIT_1128) Accession : YP_004871253.1 Strain : Glaciecola nitratireducens FR1064 Genome accession: NC_016041 Putative virulence/resistance : Virulence Product : ClpB protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1224228 - 1226798 bp Length : 2571 bp Strand : + Note : - DNA sequence : ATGCGTTTAGACCGATTTACAAGCAAGTTTCAAATTGCGATTTCCGATGCACAAAGCCTCGCATTGGGAAGAGATCATCA ATACATTGAACCAGTGCATCTAATGATGGCCTTACTAAACCAGCAGGGCGGTTCTGTGCGCCCGTTATTTGATCAAGCAA AGGTCAACGTAAATAGCTTGCGTTCATCACTATCAGAAGCCATTGAAAGATTGCCTCAATTACAAGGTATTGGCGGTGAT GTTCAGCTTAGTAATGACACATTAAAACTGCTCAATTTGAGCGATAAGATTGCACAGAAGCGCAAAGATGACTACATCAC ATCTGAAATATTTGTGCTTGCATGTATGGAAGACAAAGGCCACCTAGGCACGATATTCAAAACATTAGGCGTTAAACAAG AAGCGATTGAGTCAGCGATTAATTCGTTGCGTAATGGTCAAAAAGTGACTGATCCAAATGCTGAAGATGTTCGACAAGCA CTGGAAAAGTTTACGATGGATCTAACAGAGCGTGCTGAGCAGGGAAAATTAGACCCAGTGATTGGGCGCGACGATGAGAT CCGCCGGACGATTCAAGTCCTGCAGCGCAGAACTAAAAATAATCCTGTGTTGATCGGTGAGCCAGGTGTTGGTAAAACAG CCATTGTTGAGGGTTTAGCGCAACGAATCATTAACGGCGAAGTACCTGAAGGTCTAAAGAACAAACGAGTATTATCTTTA GATATGGGCTCACTCTTAGCCGGTGCAAAATACCGTGGTGAATTTGAAGAACGTTTAAAAGCCGTGTTGAATGAGCTATC CAAAGAAGAAGGCAAAGTCATTTTATTTATTGACGAGCTTCATACCATGGTTGGCGCAGGTAAAGGTGAAGGAGCGATGG ATGCAGGAAATATGCTCAAACCAGCGTTAGCACGCGGTGAGTTGCATTGCGTCGGCGCCACTACGCTAGACGAATACAGA CAATATATTGAAAAAGACGCGGCGCTAGAACGACGCTTTCAAAAGGTGCAGGTAGATCAGCCCTCGGTGGAGGACACGAT TGCTATTTTGCGCGGACTAAAAGAGCGCTATGAGCTTCACCACTCTGTTAACATTACCGACCCGGCTATTGTTGCGGCAG CCAGACTATCTAACCGCTATATCAGCGATAGGCAGTTGCCTGATAAGGCGATTGACTTAATAGATGAAGCTGCGTCTAGC ATTAGAATGCAAATAGATTCCAAGCCAGATGAAATGGACAAGCTTGAGCGTCGAATTATTCAATTGAAGCTTGAAGAGCA GGCTTTATCCAAAGAAACCGACACTGCCAGCCTTAAAAGATTAGAGGTAATTGAAATAGAGCGCGAGCAGCTAGAGCAGA AATTTGGCGATTTAGATAAGATTTGGCGCGCTGAAAAAAATGCAATGCAGGGCACCCAGTTTATCAAGGGAGAGCTCGAA CAAGCGAAACTTGATCTCGAGATAGCGCGCAGAGCATCTGATTTGTCCAGAATGTCAGAACTCCAGTATGGCCGTATTCC TGAGCTGGAGCTCAAACTTGAGCAGGCCAGTGAGTCTGACATAATGGAAACACAGCTGATAAAAAATAAAGTGACTGAAA ATGAAATAGCCGATGTGTTATCTCGTTGGACTGGCATTCCTGTAAGCAAAATGTTGGACAGTGAGAAAGATAAACTAGTT AGTATGGAAGACACTATCGGTAAACGTGTCATTGGCCAAAGGGAAGCAGTGGTTGCTGTTTCAAATGCGATCAGGCGTTC TCGTGCTGGTCTTGCTGACCCAGATAAACCAACCGGCTCGTTTTTGTTTCTAGGTCCAACAGGGGTGGGGAAAACTGAAC TATGTAAATCATTGGCTAACTTTTTGTTTGATACTGAAGATGCCATGGTCCGCATTGATATGTCTGAGTTTATGGAGAAA CACTCAGTGTCGAGATTAGTGGGTGCGCCGCCGGGCTATGTAGGTTATGAAGAAGGTGGTTATTTAACCGAAGCCGTTAG ACGCAAACCTTATTCGGTTATTTTATTAGATGAAGTAGAAAAAGCGCATCCAGACGTATTCAATATTTTGCTGCAAGTGT TGGATGATGGCAGATTGACAGACGGGCAGGGTCGCACAGTCGACTTTAAGAACACTTTAATTATTATGACCTCTAACTTA GGTTCTGACATTATCCAAGGTCACACTGATGACAGCACCTACGAAGAAATGAAGAAGCAAGTGATGGTAGAAGTGTCAGC TCACTTTAGGCCTGAATTTATTAACAGAGTTGATGATATTGTTGTATTCCATTCATTGGGTAGGGAAGAGATAAAGTCGA TTGCTAAAATTCAGCTCTTAGGCTTACGTCAGCGCCTACAAGAAATGGGATTAAAATTAGAAATATCTGGTGCAGCATTA GATATAATTGCTGATGCGGGATTTGACCCAGTGTATGGTGCGAGACCGCTGAAGCGTGCAATTCAAACTCAGATTGAAAA CCCATTAGCTGAAACTCTATTAAGTGACAAACTTGTCGATAAGGAAGTAGTCAGAATTGATGCGGTTGATGGCGTTTTAG TGATTGCTTAA Protein sequence : MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMMALLNQQGGSVRPLFDQAKVNVNSLRSSLSEAIERLPQLQGIGGD VQLSNDTLKLLNLSDKIAQKRKDDYITSEIFVLACMEDKGHLGTIFKTLGVKQEAIESAINSLRNGQKVTDPNAEDVRQA LEKFTMDLTERAEQGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKNKRVLSL DMGSLLAGAKYRGEFEERLKAVLNELSKEEGKVILFIDELHTMVGAGKGEGAMDAGNMLKPALARGELHCVGATTLDEYR QYIEKDAALERRFQKVQVDQPSVEDTIAILRGLKERYELHHSVNITDPAIVAAARLSNRYISDRQLPDKAIDLIDEAASS IRMQIDSKPDEMDKLERRIIQLKLEEQALSKETDTASLKRLEVIEIEREQLEQKFGDLDKIWRAEKNAMQGTQFIKGELE QAKLDLEIARRASDLSRMSELQYGRIPELELKLEQASESDIMETQLIKNKVTENEIADVLSRWTGIPVSKMLDSEKDKLV SMEDTIGKRVIGQREAVVAVSNAIRRSRAGLADPDKPTGSFLFLGPTGVGKTELCKSLANFLFDTEDAMVRIDMSEFMEK HSVSRLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTLIIMTSNL GSDIIQGHTDDSTYEEMKKQVMVEVSAHFRPEFINRVDDIVVFHSLGREEIKSIAKIQLLGLRQRLQEMGLKLEISGAAL DIIADAGFDPVYGARPLKRAIQTQIENPLAETLLSDKLVDKEVVRIDAVDGVLVIA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-102 | 41 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 3e-102 | 41 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 2e-102 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_004871253.1 | ClpB protein | VFG0079 | Protein | 6e-141 | 42 |
