Gene Information

Name : Cabther_B0538 (Cabther_B0538)
Accession : YP_004864053.1
Strain :
Genome accession: NC_016025
Putative virulence/resistance : Virulence
Product : type III secretion apparatus protein, YscR/HrcR family
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 639870 - 640634 bp
Length : 765 bp
Strand : +
Note : -

DNA sequence : 
ATGGCATTGCGTTCTGGTCTTGTGAAAGCCGTGGCGACGCTTTCCCTCTTTGCCGGGATGGGCATCAGTTCGTCTCTGGT
GGCGACGGCGCAGGGGGCGCTTCAGGCGAACCCGGTGGTGTTGGTTGTCACCCTGGGCGCGCTGGCGCTGGCTCCGTTTG
CGCTCATCATGATGACCTCATTCGTCAAAATCTCGGTTGTCCTTTCCATCCTCAGAAACGCGCTGGGCACGCAGCAGGTG
CCGCCCAACCAGGTTATCACCGGGATTTCGCTCATTCTGACGATATTCATCATGGCGCCTGTCGCTGAGAAAATGCTGGA
GGAAGCCGGCCTGTCGGACGCCACCGCGCCGGTTTTCACGGAAATGCGGGCGGATACGCTGTTCAAGGCGCTGGACAAGG
GCAAGGAGCCACTCCGTGCCTTTCTCGAACGCAATGCCCACGAAGCCGACCGCCGTCTGTTTCTGGGGCTGGCCCAGCGT
CTGGCGCAGAAAAACGGCAAGGACCCGAATGCCATTACGGTACGGGATTTCCGCGTCGTCGTGCCGGCGTTTGTCACCAG
CCAGTTGACCGAGGCGTTTCAGATTGGCTTCCTGCTGTTCATTCCCTTTCTCGTCATTGACATGCTCGTGTCGAACATCC
TGCAGGCGATGGGGATGTTCATGCTGTCGCCGACAATGATTTCCCTCCCTTTCAAGCTGCTGCTCTTTGTGCTGGTCAAG
GGCTGGGTGACGCTCATCCAGAATCTCGTGCTCAGCTATGCCTGA

Protein sequence : 
MALRSGLVKAVATLSLFAGMGISSSLVATAQGALQANPVVLVVTLGALALAPFALIMMTSFVKISVVLSILRNALGTQQV
PPNQVITGISLILTIFIMAPVAEKMLEEAGLSDATAPVFTEMRADTLFKALDKGKEPLRAFLERNAHEADRRLFLGLAQR
LAQKNGKDPNAITVRDFRVVVPAFVTSQLTEAFQIGFLLFIPFLVIDMLVSNILQAMGMFMLSPTMISLPFKLLLFVLVK
GWVTLIQNLVLSYA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 3e-26 46
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 3e-26 46
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 3e-26 46
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 8e-31 45
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-31 45
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 6e-24 45
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 6e-24 45
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 5e-26 45
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 9e-27 45
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-28 45
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 9e-27 45
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 6e-27 45
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 4e-27 45
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 6e-27 45
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 4e-25 45
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 3e-25 45
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 5e-31 45
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 5e-31 45
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 4e-31 45
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 3e-31 45
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 3e-31 45
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-30 45
escR AAK26700.1 EscR Virulence LEE Protein 1e-27 45
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 1e-27 45
escR AAL57527.1 EscR Virulence LEE Protein 1e-27 45
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-27 45
escR CAC81847.1 EscR protein Virulence LEE II Protein 1e-27 45
escR CAI43889.1 EscR protein Virulence LEE Protein 1e-27 45
escR AAC38369.1 EscR Virulence LEE Protein 1e-26 45
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 1e-27 45
escR AAC31528.1 L0049 Virulence LEE Protein 1e-27 45
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 1e-27 45
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 1e-27 45
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-27 45
unnamed AAL06354.1 EscR Virulence LEE Protein 3e-27 44
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 2e-23 43
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 2e-23 43
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-29 43
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-26 41
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cabther_B0538 YP_004864053.1 type III secretion apparatus protein, YscR/HrcR family VFG0044 Protein 3e-36 48
Cabther_B0538 YP_004864053.1 type III secretion apparatus protein, YscR/HrcR family VFG2338 Protein 4e-33 48
Cabther_B0538 YP_004864053.1 type III secretion apparatus protein, YscR/HrcR family VFG1259 Protein 4e-31 47
Cabther_B0538 YP_004864053.1 type III secretion apparatus protein, YscR/HrcR family VFG0519 Protein 2e-27 45
Cabther_B0538 YP_004864053.1 type III secretion apparatus protein, YscR/HrcR family VFG0715 Protein 6e-27 45
Cabther_B0538 YP_004864053.1 type III secretion apparatus protein, YscR/HrcR family VFG0827 Protein 6e-28 45
Cabther_B0538 YP_004864053.1 type III secretion apparatus protein, YscR/HrcR family VFG0394 Protein 3e-29 44
Cabther_B0538 YP_004864053.1 type III secretion apparatus protein, YscR/HrcR family VFG2016 Protein 3e-31 44
Cabther_B0538 YP_004864053.1 type III secretion apparatus protein, YscR/HrcR family VFG2494 Protein 1e-30 44
Cabther_B0538 YP_004864053.1 type III secretion apparatus protein, YscR/HrcR family VFG0188 Protein 1e-30 43