Gene Information

Name : Cabther_A0038 (Cabther_A0038)
Accession : YP_004861334.1
Strain :
Genome accession: NC_016024
Putative virulence/resistance : Virulence
Product : two component, sigma54 specific, Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 46383 - 47825 bp
Length : 1443 bp
Strand : +
Note : -

DNA sequence : 
ATGGCTGATCGTGTGCCGTCCATCCTTATCGTGGATGATGAGTTGAGTATGCGTGAACTGCTCGACCATGTGTTTCGGCG
GGCAGGCTACCGCACCTTCGTCGCGGCCAATGGGGCACAGGCCCTGGAAGCTCTGCGGGGGACGGTGTTTGACGTTGTCC
TGTCGGATGTCAGGATGCCGCGTCTGTCCGGCACCGAACTGCTGCACGAATGCCGCCAAATCTCACCCGATACGGTGGTT
ATCCTCATGACGGCCCATGGCACGGTCGAGCAGGCGCGCGAAGCCTTCAAACTCGGCGCGGACGACTTCATCCAGAAGCC
GTTCGACATTGACGAACTCAAGCTCATCGTCAAAAACGCGCTGGAAAAAAGTCTTCTGCGCCGGGAAGTCGCCCTGCTCA
AACGCGAACTGGGCGATCGCACGCGGCTGGAGAACATCATCGGGCGCAGCCGCCCCATGCAGGAAGTGTTGCGACTCATC
CAGACCATCGCCGGTACGAACAGCACGGTACTCATCACGGGTGAATCCGGCACCGGCAAGGAACTCGTTGCCCGTGGCAT
CCATGCCTGCAGCCCGCGCAGCGAACGCCCCTTTGTTTCCATCAACTGCGGCGCGTTCACGGAAACCCTCCTCGAATCGG
AACTCTTTGGCTACATGAAGGGTGCCTTCACCGGTGCCACCACGAACAAAAAAGGACTGTTCGAGGCCGCTGACGGCGGC
ACGCTGTTTCTCGATGAGATCGGCGAAATGAGCCTGGGGATGCAGGTCAAGCTGTTGCGCGCCCTGCAGGAACGCTCGAT
ACGGCGGGTGGGCGGTACGGAAGAAATCCCGGTGGATGTGCGGGTCGTTGCCGCCACCAACCGTGATCTTTCCCAGATGG
TCGAAGCCGGAACTTTCCGCAAAGACCTGTACTTCCGGGTCAACGTCATTCCCATCAACGTTCCACCGCTGCGCGAACGG
CGGGAGGACATCCGCGAGCTGGCGCTGCACTTCCTCAAAAAGTACGGGCAAAACCGCACCCCGCCGGTAACGTCCATTGC
CGAAACGACACTCAAGTACCTTGAAAATTACTCATTTCCGGGGAACGTCCGGGAGCTGGAAAACCTCATCGAGCGGGCCG
TGGCCCTGGAGCCAACCCACGAAATCCAGCCGGAGCGCCTGCCGGAAACCGTACTGCGCTATGACCCGGCGCGGACGGCT
TCCGTCTTCGATCTGCCGGAGCAGGGCATCCACCTCGAAAACTTCCTGATGGAAATCGAGAAATCCTATATTTTGCAGTC
TTTGCGGCGGACGCGGGGCAATCAGACCAAGGCGGCGGAGCTGCTTCACATGTCGGTGCGCAGCCTGCGCCACCTGCTCG
ACAAGCACAAAATTCGCCATACGGCGAGTATGTTCCGTGAAAGTGGGGCCTTTCGTACAGGCGACACCTCGGATGCCCCA
TAA

Protein sequence : 
MADRVPSILIVDDELSMRELLDHVFRRAGYRTFVAANGAQALEALRGTVFDVVLSDVRMPRLSGTELLHECRQISPDTVV
ILMTAHGTVEQAREAFKLGADDFIQKPFDIDELKLIVKNALEKSLLRREVALLKRELGDRTRLENIIGRSRPMQEVLRLI
QTIAGTNSTVLITGESGTGKELVARGIHACSPRSERPFVSINCGAFTETLLESELFGYMKGAFTGATTNKKGLFEAADGG
TLFLDEIGEMSLGMQVKLLRALQERSIRRVGGTEEIPVDVRVVAATNRDLSQMVEAGTFRKDLYFRVNVIPINVPPLRER
REDIRELALHFLKKYGQNRTPPVTSIAETTLKYLENYSFPGNVRELENLIERAVALEPTHEIQPERLPETVLRYDPARTA
SVFDLPEQGIHLENFLMEIEKSYILQSLRRTRGNQTKAAELLHMSVRSLRHLLDKHKIRHTASMFRESGAFRTGDTSDAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 7e-73 42
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 7e-73 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cabther_A0038 YP_004861334.1 two component, sigma54 specific, Fis family transcriptional regulator BAC0467 Protein 1e-85 46
Cabther_A0038 YP_004861334.1 two component, sigma54 specific, Fis family transcriptional regulator BAC0089 Protein 2e-91 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cabther_A0038 YP_004861334.1 two component, sigma54 specific, Fis family transcriptional regulator VFG1214 Protein 3e-79 46
Cabther_A0038 YP_004861334.1 two component, sigma54 specific, Fis family transcriptional regulator VFG1249 Protein 4e-66 43
Cabther_A0038 YP_004861334.1 two component, sigma54 specific, Fis family transcriptional regulator VFG0116 Protein 3e-59 41