Gene Information

Name : Cabther_A1725 (Cabther_A1725)
Accession : YP_004862987.1
Strain :
Genome accession: NC_016024
Putative virulence/resistance : Virulence
Product : two component, sigma54 specific, Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 2056428 - 2057636 bp
Length : 1209 bp
Strand : -
Note : -

DNA sequence : 
ATGGCCACCGCCCCGGCAGACATTTTGATTGTCGAAGACAAGGATGCTCTGCGTCAGATGTGGCGGCTGACGCTGGAGCG
TGCCGGTTACGGCGTCGTTGAGGCAGCCGATCTGAAACAGGCCCGGCAGGCCCTGCGGCGGCAGCCGCCGACCGTTGTGC
TGACCGACCTGCGCCTGCCCGATGGCACAGGGCTGGAGGTGCTTCGCGCTGCCAAGTCCCTCGACCCGGACGTGCCCGTG
GTTGTCCTGACGGCTTATGGCTCCATTGAGGAAGCCGTCGCCGCCATGAAGGACGGCGCGGAAGACTTCCTGCAAAAGCC
GGTTGATCCTGACCACCTGCTGCTGGTGCTGGAGCGCCTCGTGGAGACACACCGCCTGCGGCGCGCCTGCCTCCTGATGC
GCGAGGAATATGCCCGGCGCTATGGTTTTCCGCGCATCATCGGCGATTCCCCGGCCATGCAGCAGGTCGGACAGCAACTG
CAACGGGTCGCCCCCACGGAGACGACCGTCCTGTTGCTTGGCGAGTCCGGCACGGGCAAGGAACTGTTTGCGCGCGCCAT
TCACCACCTGAGCCACCGGCGGCAGGCGCCGTTTGTGGCCATCAACTGCGCGGCGATCCCTGAAACCCTGGTCGAAAATG
AGCTGTTCGGCCATGAGAAAGGCGCTTTTACCGGCGCGGACGGGCGGCAGGTGGGAAAGTTCGAGCTGGCACGCGGTGGG
ACACTGTTTCTCGACGAAATCGGCGAGTTGCCCCTGGCCGTCCAGTCCAAGTTCCTGCGCGCGCTGGAATCCCGCACCAT
TACACGCATCGGGGGAGGGCAGGAAATTGGTGTGGATGTCCGCGTTGTGGCGGCGACCAACCGGGACCTCGCCGCAGCCG
TAGCGGCCAGGACTTTTCGGGAGGATTTGTACTACCGGCTGGCCGTATTCACGCTGGAAATCCCGCCGCTGCGTGAGCGG
CGGGAGGACATTCCGGCGCTGGCGAACTACTTTGCCGAAAAGTACGGCCGCGAAATCCGCCGCCGCCGGGTCACGCTTTC
CCCGGCCGCCCTCAAAGCCCTTCAGGACTACGACTTTCCGGGCAACATCCGCGAGCTTGAAAACTGCATCGAGCGGGCCT
GCATTCTCTGCGAAGGAACAACACTGGAGCCGGAGGACCTGCGGTTGCCGACGGCTACATCTCCGGCCGGGCGCCGCCGC
CGAAGCTGA

Protein sequence : 
MATAPADILIVEDKDALRQMWRLTLERAGYGVVEAADLKQARQALRRQPPTVVLTDLRLPDGTGLEVLRAAKSLDPDVPV
VVLTAYGSIEEAVAAMKDGAEDFLQKPVDPDHLLLVLERLVETHRLRRACLLMREEYARRYGFPRIIGDSPAMQQVGQQL
QRVAPTETTVLLLGESGTGKELFARAIHHLSHRRQAPFVAINCAAIPETLVENELFGHEKGAFTGADGRQVGKFELARGG
TLFLDEIGELPLAVQSKFLRALESRTITRIGGGQEIGVDVRVVAATNRDLAAAVAARTFREDLYYRLAVFTLEIPPLRER
REDIPALANYFAEKYGREIRRRRVTLSPAALKALQDYDFPGNIRELENCIERACILCEGTTLEPEDLRLPTATSPAGRRR
RS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-62 42
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-62 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cabther_A1725 YP_004862987.1 two component, sigma54 specific, Fis family transcriptional regulator BAC0467 Protein 4e-79 47
Cabther_A1725 YP_004862987.1 two component, sigma54 specific, Fis family transcriptional regulator BAC0089 Protein 9e-84 47
Cabther_A1725 YP_004862987.1 two component, sigma54 specific, Fis family transcriptional regulator BAC0022 Protein 4e-47 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cabther_A1725 YP_004862987.1 two component, sigma54 specific, Fis family transcriptional regulator VFG1214 Protein 7e-76 46
Cabther_A1725 YP_004862987.1 two component, sigma54 specific, Fis family transcriptional regulator VFG0116 Protein 9e-66 45
Cabther_A1725 YP_004862987.1 two component, sigma54 specific, Fis family transcriptional regulator VFG1249 Protein 2e-66 45