Gene Information

Name : RATSFB_0054 (RATSFB_0054)
Accession : YP_004856542.1
Strain : Candidatus Arthromitus sp. SFB-rat-Yit
Genome accession: NC_016012
Putative virulence/resistance : Virulence
Product : capsular polysaccharide biosynthesis protein
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG2148
EC number : -
Position : 74355 - 75002 bp
Length : 648 bp
Strand : +
Note : -

DNA sequence : 
ATGGATACTCATTTTATACATATTTATAAAAAATATAAGAAGTCAATTGTTTATGAGATATTAAAGAGGTCTTTAGATAT
AGTTGTATCACTAATAGCTTTAATAATTTTATCTCCAATTTTTTTAGTTATAGCTATATTAATTAAATTAGATTCTAGAG
GATCTGTTATATTTTCTCAGTTTAGGGTTGGTAAAAATGGTAGAATTTTTAAAATGTATAAATTTAGATCTATGGTTGAG
AATGCAGAAGATATATTAAGGGAATTAAAAAATAAAAATGAAATGTCTGGTCCTATGTTTAAAATAAAACATGATCCAAG
AGTTACGAAGATAGGTAGATTTATAAGGAAAACTAGCTTAGATGAATTGCCACAACTTATAAATGTTTTAAAAGGAGATA
TGTCATTAGTTGGACCAAGACCCAATTTACCAATAGAAGTTAAGGAATTTGAAAAATGGATGCTTGATAAGCTTGTTATT
AGACCAGGATTAACATGTTTTTGGCAGACTATGGGGAGAAATACGATTGATTTTGTTGAATGGATGAAGTTAGATATTAA
ATATGTTCAAGAAAGAAATTTATTTTTAGACATAATTTTAATAATAAAGACGTTTAAAGTATTATTTGGGGATAAAACTG
CAAGTTAA

Protein sequence : 
MDTHFIHIYKKYKKSIVYEILKRSLDIVVSLIALIILSPIFLVIAILIKLDSRGSVIFSQFRVGKNGRIFKMYKFRSMVE
NAEDILRELKNKNEMSGPMFKIKHDPRVTKIGRFIRKTSLDELPQLINVLKGDMSLVGPRPNLPIEVKEFEKWMLDKLVI
RPGLTCFWQTMGRNTIDFVEWMKLDIKYVQERNLFLDIILIIKTFKVLFGDKTAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0070 YP_300160.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 1e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RATSFB_0054 YP_004856542.1 capsular polysaccharide biosynthesis protein VFG1369 Protein 4e-14 43
RATSFB_0054 YP_004856542.1 capsular polysaccharide biosynthesis protein VFG1309 Protein 7e-22 41