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Name : lysS (RATSFB_1266) Accession : YP_004857754.1 Strain : Candidatus Arthromitus sp. SFB-rat-Yit Genome accession: NC_016012 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 1435190 - 1436722 bp Length : 1533 bp Strand : - Note : - DNA sequence : GTGGAAATTGCAAATATAAAATTATTAAAATACAGAGGAAGTAGAAAATTTAAGGGGAGTGTTGAAATGGAATTTAATGA ACAAGAGCTTATACGTCGCAATAAACTTAGTGATCTTCAAGAAAGAGGAATGGATCCATTTAACGTTTATAAGGTAGATG TTACAGATTATTCTAAGAGCATAATTGATAATTATTCAGATTATGAGGGTAGAGTTGTAAAACTTGCTGGGAGAATTATG ACTAAAAGAGGACAAGGAAAAGCAGGATTTATAACTATACAGGATACTTTAGGACAGATTCAAATTTTTGTAAAGATTGA TATATTAGGGAAAGAAGTATTAGATAATGTTTTTTCATATGATATAGGTGATATTATATGGGTTGAAGGTGAAGTATTTA AAACTAAAGTTGGAGAAATTACTGTAAGGGTTTCAAAGATTAATTTAATATCAAAATCGTTGAGAGTTCTTCCAGAGAAG TTTCATGGTATAACGGATCCAGATTTAAGATATAGACATAGAGAAATAGATATAATAATGAATAAAGATGTTAAAGATGT TTTTCTAAAAAGAAGCAAAATAATATCTGAGATACGTTCATTTTTAGATAATAGAGGATATTTGGAAGCTGAAACTCCTA TACTTTCATTGATTGCAGGTGGTGCTGCAGCACGTCCATTTTTAACTCATCACAATACTTTAAATATGGATATGTATTTG AGGATTGCAACGGAACTTTATTTAAAGAGGCTTATAGTTTCAGGATTTGATAAAGTTTATGAAATGGGAAAGAACTTCAG AAATGAAGGAATTGATATAAAGCATAATCCAGAATTTACTATGATTGAGCTTTATGAAGCGTATTCGGATTATAACGATA TGATGAAACTTACAGAGGATTTAATATCTAGCGTATGTTTAAAAGTTTGTGGAAGTATGAAAATTAATTACCAAGGAACA GAGATTGATTTTACTCCCCCATGGAGAAGGATTAGTATGCTTGATGCCGTTTATGAATACTCTGGTGTTGATTTTAATAC ATTGACGCTTGAAGATTCTTATAATATTGCAAAAGAGCATAATCTTGAATTTAAAAAGAATCTTAAGGATTGTTCAAAAG GTGAAGTTTTGAATGCTATGTTTGAGAAATATGTTGAGGATAATTTAATACAACCTACTTTTATTATTGATTATCCTGTT GAGATATCTCCACTTACAAAGAAGAAAAGGGGAGATGAGAATTTTACAGAGAGATTTGAAGGATTTATATATGGTCGTGA AATATGTAATGCATATTCAGAGCTTAATGATCCTATAGTTCAAAGAGAGAGATTTTCAAAGCAAGAGCTTGATCGTGAAC TTGGAGATGACGAAGCTTATTCTATAGATGAGGATTTTATGTATTCTCTTGAATATGGTATGCCGCCAACTGGAGGGCTT GGAATTGGAATTGATAGAATTGTAATGTTCTTGACTAATTCTTATTCGATAAGAGATGTAATATTATTCCCTACAATGAA ACCTTTGAAATAA Protein sequence : MEIANIKLLKYRGSRKFKGSVEMEFNEQELIRRNKLSDLQERGMDPFNVYKVDVTDYSKSIIDNYSDYEGRVVKLAGRIM TKRGQGKAGFITIQDTLGQIQIFVKIDILGKEVLDNVFSYDIGDIIWVEGEVFKTKVGEITVRVSKINLISKSLRVLPEK FHGITDPDLRYRHREIDIIMNKDVKDVFLKRSKIISEIRSFLDNRGYLEAETPILSLIAGGAAARPFLTHHNTLNMDMYL RIATELYLKRLIVSGFDKVYEMGKNFRNEGIDIKHNPEFTMIELYEAYSDYNDMMKLTEDLISSVCLKVCGSMKINYQGT EIDFTPPWRRISMLDAVYEYSGVDFNTLTLEDSYNIAKEHNLEFKKNLKDCSKGEVLNAMFEKYVEDNLIQPTFIIDYPV EISPLTKKKRGDENFTERFEGFIYGREICNAYSELNDPIVQRERFSKQELDRELGDDEAYSIDEDFMYSLEYGMPPTGGL GIGIDRIVMFLTNSYSIRDVILFPTMKPLK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 5e-99 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_004857754.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-99 | 45 |
