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Name : clpC (RATSFB_1246) Accession : YP_004857734.1 Strain : Candidatus Arthromitus sp. SFB-rat-Yit Genome accession: NC_016012 Putative virulence/resistance : Virulence Product : negative regulator of genetic competence ClpC/mecB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1414595 - 1417033 bp Length : 2439 bp Strand : - Note : - DNA sequence : ATGTTTGAAAAATTAACTGAAAGGGCTAGAAAGGTTATAAGCTATTCGGGTGATGATGCACTAAAGTTGGGTCATGGATT TATAGGAACAGAACATATATTACTTGGTTTACTAAGAGAGGATGGACCTGCACAGAAAATTTTAAATTCTTTTGATGTAT ATTATGATGATATATTTAAGGAAATTAGAACTATTTTATCTCCAGGAGAGATAGAAATAAAAAATAGTGAGATACCATTA ACACCTAGGACTAAAAAGGTTATAGAGAGCAGTATAGATGAGGCTAAGAAATTAGGGCATAATCATGTATCTCCTGAACA TATACTACTATCTATTATAAATGAAACTGACGGAGTTGCTTATAAGATACTAGATAAAAAAGGTGTGTCCATAGTAAAAA TATGGAACCAAACTATAAATGCCCTTAATGTTACAATTGATATACAAAATCCACACGAAAAAGAACAACAACTTAAAAAT TTACCGACACCTGTATTGGATCAGCATGGCAGAGATCTTACAAAATTGGCTAATGAAGGGAAATTAGATCCTGTTATAGG AAGAGATATAGAAACACAAAGAGTTCTTGAAATATTGTGTAGAAGAATAAAAAATAATCCATGTTTAATAGGTGATCCGG GAGTTGGTAAAACAGCTATTATCGAGGGGTTAGCACAAAAAATAACAGAAGGTAATATACCGGAGATATTGAAAAATAAA CGTGTTGTGACCTTAGATTTATCTTCTTTGATTGCTGGAACAAAATACAGAGGAGAATTTGAGGAAAGATTAAAGAAAAT AATGGAAGAGATAAAAAAATCCAAAAATATAATTTTGTTTATAGATGAGATACATACAATAATTGGTGCTGGTGGAGCCG AGGGAGCTATAGATGCATCTAATATATTAAAACCAGCCTTAGCTAGAGGAGAAATACAGTGTATAGGAGCCACAACTATT GATGAATATAGAAAATATATAGAAAAAGATACGGCTTTAGAACGAAGATTTCAACCCATATTTGTTGGAGAACCTAATGA GGATGAAACGATAGATATATTAATGGGTATAAGAGATAAATATGAAACTCATCATAAAGTAAAAATTACTGATGAAGCTA TAAGGTTTGCGGTTAGTCTATCTGTTAGATTTATCCCAGATAGATATTTACCAGATAAAGCTATAGATTTAATTGATGAG GCTGCTGCAAAAATAAGGGTTAGAAATTTAACAGTACCTATTGAAGTTAAAGAAATAGAAGAGGAAATAGCAAAAGTTGG TAAGGAAAAGCAAGAAGCGATAACTTTAGAAGATTTTGAGAAGGCAGCTTCGCTTAGGGATAAAGAACAGAAACTTAAAG AAAGATTGGAAAATTCAAAAGAGAAGTGGAAAGTTGAAAAATATGACAAGGAATTTATACTTACTGAGCAGGAGTTAGCG TCTGTTGTAGCAAGCTGGACTAAGATACCAGTTGAAAAATTAACACAAACAGAATCGGAAAAATTATTAAAATTAGAGGA AATGTTAAAAAATAGAGTAATAGATCAAAATGAGGCTGTAACATCTGTTGCTAAGGCTGTTAAACGTGGACGTGTTGGAA TTAAGGATCCTAAAAGACCTATTGGTTCATTTATATTTTTAGGGCCTACTGGAGTTGGTAAAACTGAATTGTGTAAGGCT CTATCAGATATTGTTTTTGGAAGTGAAGAGAATATAATAAGATTTGATATGTCTGAATTTATGGAAAAACATACGGTATC AAAGATTATTGGATCACCACCAGGGTATATTGGATTCCAAGAGGGGGGACAATTGACAGAGAAAGTCAGGAGATCACCAT ATTCTATTATATTATTTGATGAAATAGAGAAGGCTCATCCGGATATATTTAATATAATGCTACAAATTTTAGAAGATGGA CATTTAACAGATTCAAATGGGAAGAGAGTTAGTTTTAAAAATACAATAATAATATTAACGTCAAACATAGGAGCAGATAT AATTAATAAAAATTCATCATTAGGTTTTATAAATCACAAGAATAATGAAGAAGAAATTTATACTAAAATGAAAAATAATG TTTTGAGTGAGCTTAAGAAAAATTTTAGACCTGAGTTTTTAAATAGATTAGATGATGTGATAGTATTTAAACCGCTGGAT AAAAAAAGTCTCACAAAAATATTAGATAAGATGCTACTTGATTTTAATATTAGAGTGTCAAGTCAAGATATATCAATTAA TTTTAGTGAAGATGTAAAGAATTATATACTTGATAATAGTTTGAGTGAAAAATATGGGGCTAGGCCATTAAGAAGGTCTA TAACTAAATATATTGAGGATACTTTGTCTGACCAAATATTATTAGGAAACATTAAATCTGGAGATAATGTGGAAGCTGTG TTAAAAGACAATGAAATTTTTTATTTTAAGAAGCCTTAA Protein sequence : MFEKLTERARKVISYSGDDALKLGHGFIGTEHILLGLLREDGPAQKILNSFDVYYDDIFKEIRTILSPGEIEIKNSEIPL TPRTKKVIESSIDEAKKLGHNHVSPEHILLSIINETDGVAYKILDKKGVSIVKIWNQTINALNVTIDIQNPHEKEQQLKN LPTPVLDQHGRDLTKLANEGKLDPVIGRDIETQRVLEILCRRIKNNPCLIGDPGVGKTAIIEGLAQKITEGNIPEILKNK RVVTLDLSSLIAGTKYRGEFEERLKKIMEEIKKSKNIILFIDEIHTIIGAGGAEGAIDASNILKPALARGEIQCIGATTI DEYRKYIEKDTALERRFQPIFVGEPNEDETIDILMGIRDKYETHHKVKITDEAIRFAVSLSVRFIPDRYLPDKAIDLIDE AAAKIRVRNLTVPIEVKEIEEEIAKVGKEKQEAITLEDFEKAASLRDKEQKLKERLENSKEKWKVEKYDKEFILTEQELA SVVASWTKIPVEKLTQTESEKLLKLEEMLKNRVIDQNEAVTSVAKAVKRGRVGIKDPKRPIGSFIFLGPTGVGKTELCKA LSDIVFGSEENIIRFDMSEFMEKHTVSKIIGSPPGYIGFQEGGQLTEKVRRSPYSIILFDEIEKAHPDIFNIMLQILEDG HLTDSNGKRVSFKNTIIILTSNIGADIINKNSSLGFINHKNNEEEIYTKMKNNVLSELKKNFRPEFLNRLDDVIVFKPLD KKSLTKILDKMLLDFNIRVSSQDISINFSEDVKNYILDNSLSEKYGARPLRRSITKYIEDTLSDQILLGNIKSGDNVEAV LKDNEIFYFKKP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_004857734.1 | negative regulator of genetic competence ClpC/mecB | VFG0079 | Protein | 0.0 | 55 |
| clpC | YP_004857734.1 | negative regulator of genetic competence ClpC/mecB | VFG0080 | Protein | 3e-138 | 52 |
