Gene Information

Name : LIV_2335 (LIV_2335)
Accession : YP_004856063.1
Strain : Listeria ivanovii PAM 55
Genome accession: NC_016011
Putative virulence/resistance : Virulence
Product : putative ferrichrome ABC transporter ATP binding protein FhuC
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 2474599 - 2475390 bp
Length : 792 bp
Strand : -
Note : Similar to B. subtilis ferrichrome ABC transporter (ATP-binding protein) FhuC

DNA sequence : 
ATGAAATCAGCACTAGAACTAAAAAACATTTCTTTCTCACGTAAAAGAGATTTTCAAATGTCAGCTATAAATGCAGCTAT
TCCTGAGGGCAAAATTACGACACTGATTGGACCAAATGGTTCTGGAAAATCAACTATGTTGCGTTTAATGATGCGACTTT
TGACGCCAGATAGCGGTGAAATTTTATTAGATGATAAGAATATTACTGCTATTTCGGCAAAAGAACTTGCGAAAAAAATG
ACAATGCTGGCACAAGCTCCAGAAGGCCTTGTAGATGTCATTGTGCATGATTTGGTTGCATATGGTCGCTTGCCGTATCG
AAGCTTTCTATCGACTTTGCAAGAGGAAGACGAAGCAGTCATTCAGTGGGCAATCAAAGTTTGTAATTTAGAAAGTTTGG
CATATCGACCACTTCATTCTTTATCAGGTGGAGAACGACAACGAGCATGGCTTGCAATGGCATTAGCGCAGAAAACACCA
ATTTTATTACTTGATGAACCGACGACCTATCTCGATATCGCTCATCAACTAGAACTATTAGATTTACTTGTTCATTTAAA
TAAAGAATATAATTTAACGATTGTTTTAGTACTTCATGATTTAAATCAAGCGGCGATTTACAGCGATTATGTGTTTGTTT
GTGAAAATGGTCAATTAGTAAAGAATGGTACGCCAAAAGAAGTGTTCACGATAGATTTACTTCGGAATGTTTTTCATATT
ACGGCAGATATCACCGAAAAAGACGGAAAGCAGCACATTCATCCGATTGCTTCGACGAGATTTGAATATTAA

Protein sequence : 
MKSALELKNISFSRKRDFQMSAINAAIPEGKITTLIGPNGSGKSTMLRLMMRLLTPDSGEILLDDKNITAISAKELAKKM
TMLAQAPEGLVDVIVHDLVAYGRLPYRSFLSTLQEEDEAVIQWAIKVCNLESLAYRPLHSLSGGERQRAWLAMALAQKTP
ILLLDEPTTYLDIAHQLELLDLLVHLNKEYNLTIVLVLHDLNQAAIYSDYVFVCENGQLVKNGTPKEVFTIDLLRNVFHI
TADITEKDGKQHIHPIASTRFEY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 7e-38 49
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 1e-40 47
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 1e-40 47
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-35 47
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 7e-40 44
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 7e-40 44
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 7e-40 44
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 7e-40 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LIV_2335 YP_004856063.1 putative ferrichrome ABC transporter ATP binding protein FhuC BAC0164 Protein 4e-38 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LIV_2335 YP_004856063.1 putative ferrichrome ABC transporter ATP binding protein FhuC VFG1042 Protein 4e-38 49
LIV_2335 YP_004856063.1 putative ferrichrome ABC transporter ATP binding protein FhuC VFG0925 Protein 3e-34 45