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Name : clpC (LIV_0202) Accession : YP_004854031.1 Strain : Listeria ivanovii PAM 55 Genome accession: NC_016011 Putative virulence/resistance : Virulence Product : putative endopeptidase Clp ATP-binding chain C Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 234677 - 237139 bp Length : 2463 bp Strand : + Note : - DNA sequence : ATGATGTTTGGACGTTTTACGCAAAGAGCTCAGAAAGTACTCGCTTTGTCACAAGAAGAGGCAATGCGCTTGAATCATAG TAATTTAGGTACGGAACATATACTGCTTGGACTTGTTAGAGAGGGAGAAGGGATTGCAGCAAAAGCGCTCTATGAACTTG GAATTAGTGCTGAAAAAGTTCAACAAGAAGTAGAAGGATTAATTGGTCATGGCGAAAAAGCTGTAACGACCATTCAATAT ACACCTCGAGCTAAAAAGGTAATTGAACTTTCAATGGATGAAGCACGGAAACTTGGACATACGTATGTTGGAACAGAGCA TATTCTATTAGGACTTATTCGGGAAGGTGAAGGAGTTGCCGCTCGAGTTTTAAGCAATCTAGGTATTAGCTTGAATAAAG CTAGACAACAAGTATTGCAACTGCTTGGTGGCGGGGATGCAACTGGAGCTGGAAGACAAACTAATACGCAAGCGACGCCT ACGTTAGACAGTTTAGCTCGTGATTTGACTGTTATTGCTCGTGAGGATAATTTGGATCCGGTTATTGGCCGCTCTAAAGA AATTCAACGTGTGATTGAAGTGTTAAGTCGTCGGACAAAAAATAATCCAGTTCTTATTGGGGAACCAGGTGTAGGTAAAA CAGCGATTGCTGAGGGGCTAGCACAGCAAATTGTACGTAATGAAGTTCCTGAGACGTTGCGCGGAAAGCGTGTAATGACG CTTGATATGGGGACTGTAGTTGCAGGAACTAAATATCGCGGTGAATTTGAAGACCGATTGAAAAAAGTAATGGATGAAAT TCGCCAAGCTGGAAATGTGATTTTATTTATTGACGAACTTCATACGTTAATTGGTGCTGGTGGAGCGGAAGGTGCAATTG ATGCATCTAACATTTTGAAGCCACCTCTAGCTCGTGGAGAGTTGCAATGTATTGGTGCAACAACGCTTGATGAGTACCGG AAATATATTGAAAAAGACGCAGCACTTGAAAGGCGTTTCCAACCAATTAAAGTAGATGAACCGACTGTTGAGGAATCCAT TCAAATTTTACATGGCTTACGTGATCGTTATGAAGCGCATCACCGGGTTGCTATTACTGATGCGGCGCTTGATGCAGCAG TTCGCTTATCGGACCGCTACATTTCTGACCGCTTCTTACCAGACAAAGCAATTGATGTGATTGATGAAGCTGGTTCTAAA GTTCGGTTGAAATCTTTTACAACACCCAAAAATGTAAAAGAAATGGAGAATAACTTAACAGATTTGAAGAAGGAAAAAGA TGCAGCTGTGCAAGGTCAAGAATTCGAAAAAGCGGCAGCATTACGAGATAAAGAGCATAAACTTAAAAAATCTTTAGAAG AAACAAAAGCAAATTGGAAAGAAAAACAAGGGCTTGATCATAGTGAAGTGACAGAAGATATTGTTGCAGAAGTTGTAGCT AGTTGGACTGGAATTCCGGTTGCAAAACTTGCTGAAACGGAAACAAATAAATTACTTAACATGGAAAAACTTTTACATGA GCGAGTAATTGGTCAGGATGCTGCTGTTAAAGCTGTATCCCTAGCCGTTCGTCGGGCGCGTGCTGGACTTAAAGATCCGA AGCGTCCAATAGGTTCCTTTATTTTCCTTGGACCAACTGGTGTCGGAAAAACCGAACTTGCTCGTGCACTTGCGGAGTCA ATGTTTGGTGATGAAGATTCAATGATTCGGATTGATATGTCAGAGTATATGGAGAAATTTTCAACTGCTCGTTTAGTTGG GGCTCCTCCTGGTTACGTTGGTTATGAAGAAGGTGGACAATTAACTGAGAAAGTCCGTCAAAAACCTTATTCAGTAGTTC TTTTAGATGAGATTGAAAAAGCACATCCAGATGTATTTAATATGTTGCTACAAGTGCTAGATGATGGTCGTTTAACAGAT TCTAAAGGACGTGTAGTTGATTTTAGAAATACGGTTATCATCATGACCTCGAATATTGGTGCACAAGAAATGAAACAAGA TAAATCGATGGGCTTTAATGTAATTGACCCACTTAAAGATCATAAAGCAATGGAACACCGCGTTTTACAAGATTTAAAAC AAGCGTTCCGTCCAGAGTTTATCAATCGCATTGATGAAACCATTGTGTTCCATTCGCTTCAAGAGAAAGAGCTAAAACAA ATTGTAACGCTTCTAACTGCACAATTAACTAAACGCCTTGCTGAACGTGATATACATGTGAAGCTGACAGAAGGCGCGAA AGCTAAAATTGCAAAAGACGGTTATGACCCAGAATACGGGGCTCGTCCTTTGAAACGGGCAATTCAAAAAGAAGTAGAGG ATATGCTTTCTGAAGAGTTGCTTCGTGGAAATATCAAAGTGGGAGATACAATTGAAATTGGTGTGAAAGATGGGAAGCTG AAAGTTAGACAAAAAGCTGCACCTAAAAAGAAAGCTACACCTAAAAAAGTTAAAACAAAATAA Protein sequence : MMFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEGIAAKALYELGISAEKVQQEVEGLIGHGEKAVTTIQY TPRAKKVIELSMDEARKLGHTYVGTEHILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDATGAGRQTNTQATP TLDSLARDLTVIAREDNLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVRNEVPETLRGKRVMT LDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNVILFIDELHTLIGAGGAEGAIDASNILKPPLARGELQCIGATTLDEYR KYIEKDAALERRFQPIKVDEPTVEESIQILHGLRDRYEAHHRVAITDAALDAAVRLSDRYISDRFLPDKAIDVIDEAGSK VRLKSFTTPKNVKEMENNLTDLKKEKDAAVQGQEFEKAAALRDKEHKLKKSLEETKANWKEKQGLDHSEVTEDIVAEVVA SWTGIPVAKLAETETNKLLNMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES MFGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDEIEKAHPDVFNMLLQVLDDGRLTD SKGRVVDFRNTVIIMTSNIGAQEMKQDKSMGFNVIDPLKDHKAMEHRVLQDLKQAFRPEFINRIDETIVFHSLQEKELKQ IVTLLTAQLTKRLAERDIHVKLTEGAKAKIAKDGYDPEYGARPLKRAIQKEVEDMLSEELLRGNIKVGDTIEIGVKDGKL KVRQKAAPKKKATPKKVKTK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 58 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 6e-96 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_004854031.1 | putative endopeptidase Clp ATP-binding chain C | VFG0079 | Protein | 0.0 | 99 |
| clpC | YP_004854031.1 | putative endopeptidase Clp ATP-binding chain C | VFG0080 | Protein | 5e-155 | 52 |
