Gene Information

Name : LIV_1940 (LIV_1940)
Accession : YP_004855687.1
Strain : Listeria ivanovii PAM 55
Genome accession: NC_016011
Putative virulence/resistance : Virulence
Product : putative ferrichrome ABC transporter ATP binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 2047648 - 2048472 bp
Length : 825 bp
Strand : +
Note : Similar to ferrichrome ABC transporter (ATP-binding protein)

DNA sequence : 
ATGAAAGACTTGCATACAGACAACTTGCAAATTTCATACGACAAACGAATCATTGTTGATGGTTTAGATATAGCCATTCC
GGCGAATAAAATCACTGCCTTAGTTGGAGCCAATGGTTCTGGGAAATCAACTATTTTAAAAACGATGTCCCGGTTAATGA
AACCCAGTCACGGGGCAGTTTATTTAGATGGCAAGAGCATTCATAGCCAACCTACGAAGGAAATCGCCAAACAGTTAGCA
ATATTACCACAAAACCCGTCTGCACCCGATGGACTAACCGTATTCGAATTAATTTCTTACGGTCGCTCCCCCCATCAAAG
CAGCTTTAAATCAATCACTGCAAAAGATCGGGAAATTATTTTCTGGTCATTAAGAGTAACTAATTTAACTGAATTTGCAG
ATCGTCCGATTGATAGTTTATCTGGTGGACAGCGCCAACGAGCTTGGATTGCCATGGCTCTTGCGCAAGAAACAGATGTT
TTATTTTTAGATGAACCAACCACATTTTTAGATATGACACACCAATTAGATGTACTTAATTTACTCAAACAACTAAACCA
ATCAGAAAACCGGACGATTGTTATGGTTGTTCATGATTTAAATCACGCATCTCGTTATGCACAACACATGATTGCAATCA
AAGAAGGACAAGTAGTTGCAGAAGGAACACCCGTTAGCGTCATGACTGAAAAAACGTTAGAAGATGTTTTTAATATCAAA
GCAGATATCTTAATCGACCCACGTAGCGGTGTGCCCCTTTGCCTTCCATATGAGACTTGTAACGGTTGTGAAATTGTAAA
GGAGCTTGATTCGATTGCCAAATAA

Protein sequence : 
MKDLHTDNLQISYDKRIIVDGLDIAIPANKITALVGANGSGKSTILKTMSRLMKPSHGAVYLDGKSIHSQPTKEIAKQLA
ILPQNPSAPDGLTVFELISYGRSPHQSSFKSITAKDREIIFWSLRVTNLTEFADRPIDSLSGGQRQRAWIAMALAQETDV
LFLDEPTTFLDMTHQLDVLNLLKQLNQSENRTIVMVVHDLNHASRYAQHMIAIKEGQVVAEGTPVSVMTEKTLEDVFNIK
ADILIDPRSGVPLCLPYETCNGCEIVKELDSIAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 8e-59 50
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 8e-59 50
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-54 46
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 9e-50 45
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 9e-50 45
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-49 45
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 1e-49 45
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 1e-52 44
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 9e-56 43
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 7e-52 41
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 7e-52 41
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 7e-52 41
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 7e-52 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LIV_1940 YP_004855687.1 putative ferrichrome ABC transporter ATP binding protein BAC0164 Protein 9e-53 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LIV_1940 YP_004855687.1 putative ferrichrome ABC transporter ATP binding protein VFG0925 Protein 7e-57 46
LIV_1940 YP_004855687.1 putative ferrichrome ABC transporter ATP binding protein VFG1042 Protein 8e-53 44