Gene Information

Name : LIV_0164 (LIV_0164)
Accession : YP_004853997.1
Strain : Listeria ivanovii PAM 55
Genome accession: NC_016011
Putative virulence/resistance : Virulence
Product : putative ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 179527 - 180219 bp
Length : 693 bp
Strand : +
Note : -

DNA sequence : 
ATGCCAAAACCACTAATTGACATGAAAAATTTAACAAAAACGTATACGCTAGGCGGAGAAACTTTTAAGGCTTTAGACGA
TGTTACTTTTACCGTTGATCAAGGTGAATTTTTATCCATCGTTGGTCCATCTGGTTCAGGAAAATCAACGTTAATGAATA
TGATTGGTTGTTTAGATGTGCCAGATGAAGGAAGTTATCATCTTGATGATGTAGATGTCTTTAAACTCAGTGACAACAAA
CTATCGGAAATTAGAAATAAGAAAATCGGCTTTATTTTCCAACAGTTTAATCTGCTTCCGAAATTATCAGCTTTTGAAAA
TGTGGAACTACCATTAATCTATGCAGGGTTAAGTGTTTCGGCACGTGAAAAGGCTGCGCTCGAATGTTTGGAAAAAGTTG
GTTTGCTTGAAAAACGAAGAAATTTACCGACTCAGCTTTCTGGTGGGCAACAACAACGTGTCGCGATTGCGAGAGCACTT
GCTGGCAAACCGCAAATTCTTTTAGCTGATGAACCAACTGGAGCGCTCGACTCCAAAACAGGTAAAGAAGTAATGGGGAT
TCTTCAAGAGTTAAATCGAGCAGGAAATACGATTGTCATGATTACGCATGATCCAACCATTGCCTCTTATGGAACAAGAA
GTATTCGTATTCAAGATGGTAAATTATTCCATGAGGAGGCGACGAAAGCATGA

Protein sequence : 
MPKPLIDMKNLTKTYTLGGETFKALDDVTFTVDQGEFLSIVGPSGSGKSTLMNMIGCLDVPDEGSYHLDDVDVFKLSDNK
LSEIRNKKIGFIFQQFNLLPKLSAFENVELPLIYAGLSVSAREKAALECLEKVGLLEKRRNLPTQLSGGQQQRVAIARAL
AGKPQILLADEPTGALDSKTGKEVMGILQELNRAGNTIVMITHDPTIASYGTRSIRIQDGKLFHEEATKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-30 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-31 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-31 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-31 41
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 3e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LIV_0164 YP_004853997.1 putative ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 8e-61 56
LIV_0164 YP_004853997.1 putative ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 2e-44 49
LIV_0164 YP_004853997.1 putative ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 7e-43 48
LIV_0164 YP_004853997.1 putative ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 1e-44 45
LIV_0164 YP_004853997.1 putative ABC transporter ATP-binding protein NC_012469.1.7685735. Protein 9e-37 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LIV_0164 YP_004853997.1 putative ABC transporter ATP-binding protein VFG0869 Protein 8e-22 45