|
Name : smcL (LIV_1186) Accession : YP_004854958.1 Strain : Listeria ivanovii PAM 55 Genome accession: NC_016011 Putative virulence/resistance : Virulence Product : putative sphingomyelinase-c Function : - COG functional category : R : General function prediction only COG ID : COG3568 EC number : - Position : 1244132 - 1245139 bp Length : 1008 bp Strand : - Note : - DNA sequence : ATGGAAAAATTTAAAATTATAAAAACAATACCCAAAATATGCGGTGCTTTCATTTTTTTACTCTTTTTCACATTTTTATT TGGCCACTATGGTGAGCTGAAAACACAAGCTAGTGATGAGTATCCAGGTAATTTTAAGATTACTTCACACAACGTTTATT TATTTTCTAGAAATATATATCCTAATTGGGGACAAATGCACCGAGCTGATTTAATTGCACAAGCGGACTATATGAAAAAT AATGATGTCGTCATTTTAAACGAAGCCTTTGATACAAGTGCTTCACATCGACTATTAAATAACCTTAGAGAAATGTATCC TCATCAAACACCCGTAATTGGGAGAAGTAAACATGGTTGGGATAAAACGGAAGGAAATTATTCCAATTTTGCTTTGGAAG ATGGTGGAGTGGCTGTCGTTAGCCAGTGGCCTATTGTCGAAAAAAGCCAACATATTTTTCAGCGCGGCGGTGGCGCAGAT CGGCTCAGTAATAAAGGATTCGCCTATGTTAAAATTATGAAAAACGGAAAACCTTATCATATAATTGGAACTCATACCCA AGCGGATGACTCGCTTATTTCTAAAGATACTAGCCGGGCGATTCGTGCAGAACAAATGCAAGAAATTCAAACATTTATTG CCAAGAAAAATATCCCTAAAGATGAAATTATCTTTATTGGAGGCGATTTGAACGTAAACTACGGTACAGATGAATATCAT GATATGTTAAAGCTTTTAAATGTTAGCTCTCCGGCAAACTTTAACGGACAGATGGCTACTTGGGATCCAACGACTAATTC GATGTTAAAAGAAAGTTATCCTAAAGCAGCACCAGAATACCTTGATTATATTTTTGTTGAAAACGGTCATGCACGTCCAC ATTCATGGCATAACAAAGTCTTGCATACCAAGTCACCACAGTGGTCTGTGAAATCTTGGTTTAAAACTTATACGTATCAA GACTTTTCAGATCATTATCCTGTAGTTGGTTTCACTGATAATAACTAA Protein sequence : MEKFKIIKTIPKICGAFIFLLFFTFLFGHYGELKTQASDEYPGNFKITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKN NDVVILNEAFDTSASHRLLNNLREMYPHQTPVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEKSQHIFQRGGGAD RLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGTDEYH DMLKLLNVSSPANFNGQMATWDPTTNSMLKESYPKAAPEYLDYIFVENGHARPHSWHNKVLHTKSPQWSVKSWFKTYTYQ DFSDHYPVVGFTDNN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAA70683.2 | sphingomyelinase-c | Virulence | LIPI-2 | Protein | 2e-149 | 99 |
| hlb | NP_646757.1 | truncated beta-hemplysin | Not tested | ¥ÕSa3 | Protein | 1e-68 | 57 |
| hlb | NP_375112.1 | hypothetical protein | Not tested | ¥ÕSa3 | Protein | 3e-69 | 57 |
| truncated-hlb | NP_372527.1 | hypothetical protein | Not tested | ¥ÕSa3 | Protein | 2e-69 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| smcL | YP_004854958.1 | putative sphingomyelinase-c | VFG0674 | Protein | 1e-149 | 99 |
| smcL | YP_004854958.1 | putative sphingomyelinase-c | VFG1798 | Protein | 3e-73 | 57 |
