Gene Information

Name : hrcR (XACM_0392)
Accession : YP_004849999.1
Strain : Xanthomonas axonopodis F1
Genome accession: NC_016010
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 442002 - 442646 bp
Length : 645 bp
Strand : -
Note : COG4790; U Intracellular trafficking, secretion, and vesicular transport

DNA sequence : 
ATGCAGATGCCTGACGTCGGCTCGCTGCTGCTGGTGGTCATCATGCTGGGCTTGCTGCCCTTCGCAGCGATGGTGGTCAC
CTCCTACACCAAGATCGTGGTCGTGCTCGGCCTGCTGCGCAATGCGATCGGGGTACAGCAGGTGCCGCCCAACATGGTCC
TCAATGGCGTTGCATTGCTGGTGTCGTGCTTTGTGATGGCCCCGGTGGGCATGGAGGCGTTCAAGGCCGCACAGAACTAC
GGCGCCGGATCGGATAACAGCCGCGTGGTGGTGCTGCTCGACGCCTGCCGCGAGCCGTTTCGGCAATTCCTCCTCAAACA
CACACGCGAGCGCGAAAAGGCGTTTTTCATGCGTTCTGCACAGCAGATCTGGCCCAAGGACAAGGCCGCCACGCTCAAGT
CGGACGACTTGCTGGTCTTGGCACCGGCATTCACGCTCAGCGAATTGACCGAAGCCTTCCGTATCGGCTTTCTGTTGTAT
CTGGTGTTTATCGTCATCGACCTGGTGGTGGCCAACGCGCTGATGGCGATGGGCCTTTCACAGGTCACCCCGACCAATGT
GGCGATCCCGTTCAAGCTGCTGTTGTTTGTCGCCATGGACGGCTGGTCGATGCTGATTCACGGCCTGGTTCTGAGCTATC
GGTGA

Protein sequence : 
MQMPDVGSLLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQNY
GAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKSDDLLVLAPAFTLSELTEAFRIGFLLY
LVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAMDGWSMLIHGLVLSYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 2e-89 100
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 1e-89 100
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 2e-89 100
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-88 100
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-88 99
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 1e-87 98
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-87 97
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-87 97
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-44 50
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-37 46
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 3e-33 44
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 3e-33 44
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 3e-33 44
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 8e-30 44
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-29 44
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-29 44
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 7e-30 44
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 9e-30 44
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 9e-30 44
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 1e-33 42
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 5e-32 42
escR AAC31528.1 L0049 Virulence LEE Protein 4e-35 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 5e-35 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 4e-35 42
escR AAK26700.1 EscR Virulence LEE Protein 4e-35 42
escR AAL57527.1 EscR Virulence LEE Protein 4e-35 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 4e-35 42
escR CAI43889.1 EscR protein Virulence LEE Protein 4e-35 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 6e-35 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 6e-35 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 6e-35 42
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 6e-35 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 5e-35 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 6e-35 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 4e-35 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 4e-35 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-35 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-35 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-35 41
escR AAC38369.1 EscR Virulence LEE Protein 3e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hrcR YP_004849999.1 type III secretion system protein VFG0188 Protein 3e-48 53
hrcR YP_004849999.1 type III secretion system protein VFG0394 Protein 4e-44 52
hrcR YP_004849999.1 type III secretion system protein VFG0044 Protein 3e-45 47
hrcR YP_004849999.1 type III secretion system protein VFG0827 Protein 2e-35 42
hrcR YP_004849999.1 type III secretion system protein VFG2494 Protein 1e-32 42
hrcR YP_004849999.1 type III secretion system protein VFG1012 Protein 8e-33 41
hrcR YP_004849999.1 type III secretion system protein VFG0519 Protein 6e-36 41
hrcR YP_004849999.1 type III secretion system protein VFG0715 Protein 1e-34 41
hrcR YP_004849999.1 type III secretion system protein VFG2016 Protein 3e-33 41