|
Name : clpB2 (XACM_3109) Accession : YP_004852657.1 Strain : Xanthomonas axonopodis F1 Genome accession: NC_016010 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 3596178 - 3598763 bp Length : 2586 bp Strand : - Note : COG0542; O Posttranslational modification, protein turnover, chaperones DNA sequence : ATGCGGATGGACAAGCTCACCTCGCGGTTCCAGCAGGCGCTAGCCGACGCGCAGTCGCTGGCTGTGGGCCGCGACCACAA CATCATCGAGCCGGTGCACGTGCTGGCCGCGCTGCTCGACCAGAGCGGCGGCAGCACGCGCCCGCTGCTGTCGCAGGCCG GCGTCAATGTGCCGCTGCTGCGCGAGCGCCTGGGCGAGGCGCTGGACACGCTGCCCAAGGTGTCCGGGCAGGAAGGCAAT CTGTCGATCGGCAACGATCTCAATCGCCTGCTCAACCAGACCGACAAGCTCGCCCAGCAACATGGCGACGCGTTCATCGC CAGCGAATGGTTCGTGCTGGCCGCTGCCGACGATGCCAGCCCGCTGGGCGTGGCGTTGCGCGCGGCCGGTGGCGACAAGA AGAAGATCGAAGCGGCCATCGACAAGCTGCGTGGCGGGGAAACCGTGCAGTCTGAAAACGCCGAAGAACAGCGCCAGGCG CTGGAGAAATACACCATCGACCTGACCGCACGCGCCGAGAGCGGCAAGCTCGATCCGGTGATCGGCCGCGACGAGGAAAT CCGCCGCACCATCCAGGTGCTGCAACGGCGCACCAAGAACAACCCGGTGCTGATCGGAGAACCCGGCGTGGGCAAGACCG CCATTGTCGAAGGCCTAGCCCAGCGCATCATCAACGGCGAAGTGCCCGAAGGCCTGCGCGGCAAGCGCGTGCTCTCGCTG GACATGGGCGCGTTGATCGCCGGCGCCAAATTCCGCGGCGAATTCGAAGAGCGCCTGAAGGCCGTGCTCAGCGACCTGTC GAAGAACGAGGGCCAGATCATCCTGTTCATCGACGAGCTGCACACCATGGTCGGGGCCGGCAAGGCCGATGGCGCGATGG ATGCCGGCAACATGCTCAAGCCGGCGCTGGCACGCGGCGAGCTGCATTGCATCGGCGCCACCACGCTGGACGAATACCGC AAGTACATCGAAAAAGACGCCGCACTGGAGCGCCGTTTCCAGAAAGTGTTCGTGGGCGAGCCGACTGTGGAAGACACCAT CGCGATCCTGCGCGGCCTGAAGGAGCGCTACGCGGTGCATCACGGCGTGGAGATCACCGACCCGGCCATCGTGGCCGCGG CCACGCTGTCCAACCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATCGACCTAATGGACGAAGCGGCCTCGCGT ATCCGCATGGAGATCGACTCCAAGCCCGAAGAACTCGACCGCCTGGAGCGCCGCCTGATCCAGCTCAAGATCCAGCGCGA GATGCTCAAGAAGGAAAAGGACGAGGCCTCGCGGCAGCGCCTGGCCGATCTGGAAAGCGATATCGACAAGCTCGAACGCG AGTTTTCCGACCTCAATGAAGTGTGGAAGTCGGAAAAGGCCGCGCTGCAGGGCACCACCAAGATCAAGGAGCAGATCGAG CACGCAAAGCTGGAACTGGAGGCCGCACAGCGCCGCCAGGACTACGCCAAGATGAGCGAGATCCAGTACGGCGTGCTGCC GCAACTGGAAAAGCAGATGCTGCTGGCCAACGAGGTGGAACACCACGATTTCAAGTTGGTGCAGGACCGCGTGACCGCCG AGGGAATCGCCGAAGTGGTGTCGCGCTGGACCGGCATTCCGGTCAACAAGATGCTCGAAGGCGAGCGCGACAAGTTGTTG CGCATGGAAGACGAATTGCATCATCGCGTGGTCGGTCAGAACGAGGCGATCAAGGTGGTGTCCGATGCAGTGCGCCGCTC GCGTGCCGGCCTGTCCGACCCGAACCGCCCCAGTGGCTCGTTCCTGTTCTTAGGTCCCACCGGCGTGGGCAAGACCGAAC TGTGCAAGGCGCTGGCGGATTTCCTGTTCGACAGCACCGAGGCGATGATCCGCATCGACATGAGCGAGTTCATGGAGAAG CATTCGGTCGCACGCCTGATCGGCGCGCCTCCTGGCTATGTGGGCTATGAAGAGGGCGGTTACCTCACCGAGGCCGTGCG TCGTCGTCCGTATTCGCTGATCCTGCTGGACGAAGTGGAAAAGGCGCATCCGGATGTGTTCAACATCCTGCTGCAGGTAC TCGACGATGGTCGCCTGACCGATGGCCAGGGCCGCACCGTGGACTTCCGCAATACCGTCATCGTGATGACCTCCAACCTG GGCTCGCACCAGATCCAGGAGCTGTCCGGCGACGATAGTGCCGAGGCGTACACGCAGATGAAGGCCGCGGTGATGGGCGT GGTGCAGGCGCACTTCCGCCCGGAGTTCATCAACCGGCTGGACGACATCGTGGTATTCCATCCGCTGGACAAGGCGCAGA TCAAGTCGATTGCGCGCATCCAGTTGCAAGGCCTGGAAAAACGCCTGGCCGAGCGCGGACTCAAGCTGGACCTGGACGAT GCGGCGCTGGAGGTGCTGGGCAATGTCGGCTTCGATCCGGTGTACGGCGCGCGCCCGCTCAAACGCGCGATCCAGTCGCA GGTGGAGAACCCGTTGGCGCAGCAGATCCTGTCCGGCCAGTATCTCAGCGGCGAGAGCGTGCGCGTGCGCGCCGACGGCG GGCGGCTGGTGTTTACCAAGGACTGA Protein sequence : MRMDKLTSRFQQALADAQSLAVGRDHNIIEPVHVLAALLDQSGGSTRPLLSQAGVNVPLLRERLGEALDTLPKVSGQEGN LSIGNDLNRLLNQTDKLAQQHGDAFIASEWFVLAAADDASPLGVALRAAGGDKKKIEAAIDKLRGGETVQSENAEEQRQA LEKYTIDLTARAESGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLRGKRVLSL DMGALIAGAKFRGEFEERLKAVLSDLSKNEGQIILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCIGATTLDEYR KYIEKDAALERRFQKVFVGEPTVEDTIAILRGLKERYAVHHGVEITDPAIVAAATLSNRYITDRQLPDKAIDLMDEAASR IRMEIDSKPEELDRLERRLIQLKIQREMLKKEKDEASRQRLADLESDIDKLEREFSDLNEVWKSEKAALQGTTKIKEQIE HAKLELEAAQRRQDYAKMSEIQYGVLPQLEKQMLLANEVEHHDFKLVQDRVTAEGIAEVVSRWTGIPVNKMLEGERDKLL RMEDELHHRVVGQNEAIKVVSDAVRRSRAGLSDPNRPSGSFLFLGPTGVGKTELCKALADFLFDSTEAMIRIDMSEFMEK HSVARLIGAPPGYVGYEEGGYLTEAVRRRPYSLILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNL GSHQIQELSGDDSAEAYTQMKAAVMGVVQAHFRPEFINRLDDIVVFHPLDKAQIKSIARIQLQGLEKRLAERGLKLDLDD AALEVLGNVGFDPVYGARPLKRAIQSQVENPLAQQILSGQYLSGESVRVRADGGRLVFTKD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-103 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB2 | YP_004852657.1 | ATP-dependent Clp protease subunit | VFG0080 | Protein | 2e-127 | 44 |
