Gene Information

Name : capD (NH8B_0428)
Accession : YP_004845682.1
Strain : Pseudogulbenkiania sp. NH8B
Genome accession: NC_016002
Putative virulence/resistance : Virulence
Product : polysaccharide biosynthesis protein CapD
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1086
EC number : -
Position : 446001 - 447905 bp
Length : 1905 bp
Strand : +
Note : -

DNA sequence : 
ATGATCGACAAGCTGCTTTCCTTCTCGCGCCACCACAAGATGGCGCTCCTGATGCTGATGGACGCGCTGTTGCTGCCGCT
GGCGCTCTACAGCGCGGTGGTGCTGCGCCTGGGCGGGGTGTGGGACCCCAAGCTCACCCCCTACCTGTGGATCTTCGTGG
TGCCGCCGTTGTGGGTGCTCCCGATCTTCATCAAGCTCGGGCTCTACCGCGCCGTGCTGAAGTACCTCGACGACAAGATC
GTCTACACCGTGTGCTACGGCGTCAGCCTGGCGGTGCTGGTGCTGGCGGCGGTGATCGTGATGGCGCGCATCGGGCCGTT
CCCGCGCTCGTCCATCGTCATCTTCTGGGTGTTCGCCATGGCCTACATCGGCGGCAGCCGCTTCCTGCTGCGCGGCCTGG
TGCGGCGCATCGACGCCGTGGACAGCCCGCGCGAGCACGTCATCATTTACGGCGCCGGGCGCGCCGGCATCCAGCTGATG
CTGGCCCTGCAGGCCGGGCGCGAGTACCGGCCGATGGCCTTCGTCGACGACAACCCGGCGCTGTGGCGCCACACCTTCCG
CGGCCTGGCGGTGCACGCCCCGGCCGAGCTGCCGGCGCTCTTGACCGACACCGAGGCCAAGGCCATCCTGCTGGCCTTGC
CGTCGGTGAGCCGCGCGCGCCAGCGCGAGATTCTGGAGAAGCTGGAGTCGCTGCACGTGCCGATCAAGCGCCTGCCCGGC
ATGGCCGAGCTGGTGTCGGGCGAGGTGCGGGTGGAGGAACTGAAGCGGGTCGACATCGAGGACCTGCTCGGGCGCGACCC
GGTGCCGCCGCGCCCGGAACTGCTGGCGCGCAACATCGAGGGGCGCGTGGTGATGGTCACCGGCGCCGGCGGCTCGATCG
GCTCCGAGCTGTGCCGCCAGATCGTGCGCCAGCGCCCGGCGCGCCTGATCCTGTTCGAGCTGTCGGAGTTCGCGCTGTAC
GCCATCGACCAGGAGCTCAAGGCCCTGGCACCGCAGCTGGAATGCCTGCCGCTGCTGGGCTCGGTCACCGACTACGAGCG
GCTGTTCCGCGTCATCGACGGCTTCGGCGTGCAGACGGTGTTCCACGCCGCCGCCTACAAGCACGTGCCGCTGGTCGAGC
ACAACCCGCTCGCCGGCATCCGCAACAACGCCTTCGGCACCGACGTCTGCGCCCAGGCGGCCGAGGACGGCGGGGTCGAT
ACCTTCGTGCTGATCTCGACCGACAAGGCGGTGCGCCCGACCAACGTCATGGGCGCCACCAAGCGCCTGGCCGAGCTGTG
CCTGCAGACGCGCCACGCGCGCGGCAGCCGCACGCGCTTCGTCATGGTGCGCTTCGGCAACGTGCTGGGCAGCTCGGGCT
CGGTGGTGCCGCTGTTCAAGAAGCAGATCGCCGCCGGCGGCCCGGTCACCGTCACCCACCCCGAGATCACGCGCTACTTC
ATGACCATCCCCGAGGCGGCGCAGCTGGTGATCCAGGCCGGCGCCATGGGCGAGGGCGGCGACGTGTTCGTGCTCGACAT
GGGCGAGCCGGTCAAGATCGCCGAACTGGCGCGGCGCATGGTCCACCTCTCCGGGCTCACGGTGAAGGACGAGAGCCGCC
CGGACGGCGACATCGAAATCCGCTTCAGCGGGCTGCGCCCCGGCGAGAAGCTGTACGAGGAGCTGCTGATCGGCGACAAC
GTGCTGCCGACCGACCACCCGCGTATCCTGCGCGCGCAGGAGTACCACCTCGACGAGGACGTGCTGACCGGCCTGCTGCA
GCGCCTGCGCGACGCCTGCCTGCGCCACGACGCCGACGCCGCCTTCCTCTTGCTGCAGCAGGCGGTGCACGAGTTCCAGG
CCGCCGAGCGCACGCGCGACTGGCTGGCGGAACAGGCTGCCAGCGGCGTGGGGCCGGCGCGCTGA

Protein sequence : 
MIDKLLSFSRHHKMALLMLMDALLLPLALYSAVVLRLGGVWDPKLTPYLWIFVVPPLWVLPIFIKLGLYRAVLKYLDDKI
VYTVCYGVSLAVLVLAAVIVMARIGPFPRSSIVIFWVFAMAYIGGSRFLLRGLVRRIDAVDSPREHVIIYGAGRAGIQLM
LALQAGREYRPMAFVDDNPALWRHTFRGLAVHAPAELPALLTDTEAKAILLALPSVSRARQREILEKLESLHVPIKRLPG
MAELVSGEVRVEELKRVDIEDLLGRDPVPPRPELLARNIEGRVVMVTGAGGSIGSELCRQIVRQRPARLILFELSEFALY
AIDQELKALAPQLECLPLLGSVTDYERLFRVIDGFGVQTVFHAAAYKHVPLVEHNPLAGIRNNAFGTDVCAQAAEDGGVD
TFVLISTDKAVRPTNVMGATKRLAELCLQTRHARGSRTRFVMVRFGNVLGSSGSVVPLFKKQIAAGGPVTVTHPEITRYF
MTIPEAAQLVIQAGAMGEGGDVFVLDMGEPVKIAELARRMVHLSGLTVKDESRPDGDIEIRFSGLRPGEKLYEELLIGDN
VLPTDHPRILRAQEYHLDEDVLTGLLQRLRDACLRHDADAAFLLLQQAVHEFQAAERTRDWLAEQAASGVGPAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1D AAA64643.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 1e-87 45
SSP0063 YP_300153.1 capsular polysaccharide biosynthesis protein Not tested SCC15305cap Protein 2e-85 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
capD YP_004845682.1 polysaccharide biosynthesis protein CapD VFG0029 Protein 3e-120 53
capD YP_004845682.1 polysaccharide biosynthesis protein CapD VFG1300 Protein 1e-85 44