Gene Information

Name : NH8B_3979 (NH8B_3979)
Accession : YP_004849130.1
Strain : Pseudogulbenkiania sp. NH8B
Genome accession: NC_016002
Putative virulence/resistance : Virulence
Product : Fis family two component, sigma-54 specific transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 4170558 - 4171904 bp
Length : 1347 bp
Strand : -
Note : -

DNA sequence : 
ATGACTAGAACCTCCCCCCGCCGCGTGCTGGTCGTCGACGACGAGCCGGACATCCGCGAACTGCTGGAACTGACGCTGAT
CAAGATGGGGCTGGAGGTGGTCACCGCCGCCAGCGTCGGCGACGCCTGCCGCCAGCTGTCGCGCCAGCCGTTCGACCTGG
CGCTGACCGACATGCGCCTGCCGGACGGCGAAGGGCTGGCGGTGGTCGAGCACATCGGCCAGGCCGGGCTCGACGTGCCG
GTGGCGGTGATCACTGCCTACGGCAGCGCCGACAACGCGGTGGCGGCGATGAAGGCCGGCGCCTTCGACTACCTGCAAAA
GCCGGTCAGCCTGGCGCAGCTGAGGACGCTGGTGCAATCGGCGCTGGCACTGGAGGGACGCGCGGCTGGTGGTGTCGTGG
ACGGCGCGGTGCGGCTGGCGGGTGAATCGCCGGCGATGCAGGAGGTGCGGCGGCTGATCGAGCGGCTGGCGCGTACCCAG
GCCGCGGTCTACATCCATGGCGAGTCCGGCACCGGCAAGGAGCAGGCTGCGCGGCTGATCCACGAGCAGGGGCCGCGCGC
GGCGCGGCCGTTCGTGCCGGTCAACTGCGGCGCCATCCCGGAAAGCCTGATGGAGAGCGAGTTCTTCGGTCATCGCAAGG
GCGCCTTCACCGGCGCCGACAGCGAACGCGACGGCTTCTTCCAGCAGGCCAACGGCGGCACGCTGTTCCTCGACGAGGTG
GCCGACCTGCCGTTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAGCGCGTGCGCAAGCTGGGCGGCGGCCC
CGAGGAGGCGGTCGACGTGCGCCTGTTGTGCGCCACCCACCACGACCTGGCGGCGCTGGTCGACAGCGGCGCGTTCCGCC
AGGACCTCTACTACCGCCTCAACGTCATCCAGCTCACCATGCCGCCGCTGCGCGAGCTGCGCGAGGACATCCCGCTGTTC
GTCGGCCGCCTGCTGGAGCGGCTGGCCGGCGACGGCCCGCGTCCGCGCCTCAGCCCGGACGCAGTGAAGGCGCTGTTGGG
GTACAACTATCCCGGCAACTTCCGCGAACTGGAAAACATTCTCGAACGCGCCGTGGCGCTGGCCAGCGACGCGCGGGTGG
ACGTGGCCGACCTGCAGTTGTCCGATGCCGCGTGCAGCGAGGGCGGGGCTGAGCCGCCGGTGGCGGGCGGGGGCGAAGGG
TTGCAGGAGTACCTCGATCGGGTCGAGCGCGATGCCATCGTCAAGGCGCTGCAGGCGACCCGTTTCAACCGCACCCAGGC
GGCCAAGCTGCTCGGGGTCAGCTTCCGCTCGCTGCGCTACCGCCTGGAGCGCCTCGGCATCAAGTAG

Protein sequence : 
MTRTSPRRVLVVDDEPDIRELLELTLIKMGLEVVTAASVGDACRQLSRQPFDLALTDMRLPDGEGLAVVEHIGQAGLDVP
VAVITAYGSADNAVAAMKAGAFDYLQKPVSLAQLRTLVQSALALEGRAAGGVVDGAVRLAGESPAMQEVRRLIERLARTQ
AAVYIHGESGTGKEQAARLIHEQGPRAARPFVPVNCGAIPESLMESEFFGHRKGAFTGADSERDGFFQQANGGTLFLDEV
ADLPLAMQVKLLRAIQEKRVRKLGGGPEEAVDVRLLCATHHDLAALVDSGAFRQDLYYRLNVIQLTMPPLRELREDIPLF
VGRLLERLAGDGPRPRLSPDAVKALLGYNYPGNFRELENILERAVALASDARVDVADLQLSDAACSEGGAEPPVAGGGEG
LQEYLDRVERDAIVKALQATRFNRTQAAKLLGVSFRSLRYRLERLGIK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-87 43
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-87 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NH8B_3979 YP_004849130.1 Fis family two component, sigma-54 specific transcriptional regulator BAC0089 Protein 2e-68 45
NH8B_3979 YP_004849130.1 Fis family two component, sigma-54 specific transcriptional regulator BAC0467 Protein 3e-74 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NH8B_3979 YP_004849130.1 Fis family two component, sigma-54 specific transcriptional regulator VFG1214 Protein 5e-121 60
NH8B_3979 YP_004849130.1 Fis family two component, sigma-54 specific transcriptional regulator VFG0116 Protein 5e-55 44