Gene Information

Name : qseB (NH8B_3645)
Accession : YP_004848808.1
Strain : Pseudogulbenkiania sp. NH8B
Genome accession: NC_016002
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional regulator QseB
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3831765 - 3832427 bp
Length : 663 bp
Strand : -
Note : -

DNA sequence : 
ATGCGCATTCTGCTGATTGAAGACGACGACATGATCGCCGACGGCCTCAAGGCCGGGCTCGGCCAGCTGGGCTTCGTGGT
GGACTGGTTCCGCGACGGCAAGTCGGGCCTGGCGGCGCTCTCCGGCGCGCCTTTCGACGCCGTGATCCTCGATCTCGGCC
TGCCCGGCCTCGACGGCATGGAGGTGCTGGCCGCCTGGCGCCGCGCCGGGCGCAGCGAACCGGTGCTGATCCTGACCGCG
CGCGACGCGCTGCCGGAACGGCTCAAGGGGCTCGACGCCGGTGCCGACGACTACCTGGTCAAGCCGTTCGCGCTGGCCGA
GGTGGCGGCGCGGCTGCGCGCCCTGATCCGCCGCCGCCACGGCCAGAGCGGGCCGCTCTACCTGCACGGCGCGCTCAGCT
TCGACCCGGTGGCGCGCCGCGCCACCCTGTCCGGCGAGCCGCTGGAGCTGACCGCGCGCGAGCTGGCGCTGCTCGAGCTG
CTGCTGGTCAGCAAGGGGCGCGTGCTGCCGCGCAGCCTGATCGAGGAGAAGTTGTACGGCTGGGGCCAGGAACTCGACAG
CAACGCGGTCGAGGTGCATGTGCACCATCTGCGCAAGAAGCTCGGCAGCGGCTTCATCAAGACCGTGCGCGGCATCGGCT
ACACCCTGGGGGACGAGGAGTGA

Protein sequence : 
MRILLIEDDDMIADGLKAGLGQLGFVVDWFRDGKSGLAALSGAPFDAVILDLGLPGLDGMEVLAAWRRAGRSEPVLILTA
RDALPERLKGLDAGADDYLVKPFALAEVAARLRALIRRRHGQSGPLYLHGALSFDPVARRATLSGEPLELTARELALLEL
LLVSKGRVLPRSLIEEKLYGWGQELDSNAVEVHVHHLRKKLGSGFIKTVRGIGYTLGDEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-29 49
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-21 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 6e-21 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
qseB YP_004848808.1 DNA-binding transcriptional regulator QseB BAC0638 Protein 1e-24 45
qseB YP_004848808.1 DNA-binding transcriptional regulator QseB BAC0083 Protein 2e-21 44
qseB YP_004848808.1 DNA-binding transcriptional regulator QseB BAC0487 Protein 7e-27 43
qseB YP_004848808.1 DNA-binding transcriptional regulator QseB BAC0347 Protein 2e-20 43
qseB YP_004848808.1 DNA-binding transcriptional regulator QseB BAC0308 Protein 3e-26 43
qseB YP_004848808.1 DNA-binding transcriptional regulator QseB BAC0197 Protein 6e-24 43
qseB YP_004848808.1 DNA-binding transcriptional regulator QseB BAC0111 Protein 1e-20 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
qseB YP_004848808.1 DNA-binding transcriptional regulator QseB VFG0596 Protein 4e-22 43
qseB YP_004848808.1 DNA-binding transcriptional regulator QseB VFG0473 Protein 6e-25 42
qseB YP_004848808.1 DNA-binding transcriptional regulator QseB VFG1390 Protein 4e-20 42