Gene Information

Name : NH8B_1979 (NH8B_1979)
Accession : YP_004847208.1
Strain : Pseudogulbenkiania sp. NH8B
Genome accession: NC_016002
Putative virulence/resistance : Unknown
Product : phage integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 2066998 - 2068185 bp
Length : 1188 bp
Strand : -
Note : -

DNA sequence :
GTGCCGCTTTCCGACGTCAAAATCCGTACCAGCAAGCCACTCGACAAGCCGTATAAGCTCCAGGACGGCAAGGGGCTGTA
CCTCGAGATAAGGCCGACCGGCGCCAAGTTCTGGCGCTACCGCTACTGGACATCGCCGACCAAGGACGGGATCTACACCA
TCGGCGAATACCCCGACGTGTCACGGGCCGAAGCCCGCGCCGAGCGCGAGCGCGTGCGGTTACTGGTCAAGGAAGGGAAA
AACCCCACGGCCGAGAAGAAGCTGGACAAGCTGCGCTCCCAGAAGGAAACCGCCACGACGCTCGCTGTGGTGGCCGAGGA
ATGGAAGGTGGTCAACTGGCCGCACTGGTCGGAAACGTACCGGAAGCAGGTTGAAAAGCACCTGCAGCGCGATCTGCTCG
ACGAGTACGGCGAACTCCCCATCCGCGAAGTCACCTCGGCCCAGCTACTCGCTGCCATCCGCAAGATCGACGAGCGCGGC
GCGCCGAGCATCGCCAGGCTGGTGCGACAATGGGCCGGCAGCATTTTCCGGCATGCGATTGCCACGCTGCGCGCCGACAG
CGACCCCACCTACCCCCTGCGCGGCGCCCTGAGAATGCCGCCGACACGTCACAACGCCCACCTCTCGGCTGACGAACTGC
CCGGCTTTATGAAAGCGCTCGACGCCTATAAGGGATTCGGCCTCACGCGCCTTGCCGTCAACCTGCAGATGCTCACCTTG
GTACGCACCCAGGAGCTGCGCCTGGCGGAATGGACCGAGTTCGATCTGGACGCCGCCGAGTGGCGCATACCGGCCGAGAA
GATGAAGATGCGCGATCCCCACATCGTGCCGCTACCGAAGCAGGCCGTGGCGATCATGCGCGAGTTGGAGCCGCTGACAG
GCCGGCGTCGATGGGTTTTCCCGAACATACGCAATCACGATACCGGGATGACCAACACCACCATCCTGCGCGTGATCGAG
ATACTAGGGTACAAGGGCCGGGCAACCGGTCATGGATTCCGCGCCACGGCCTCCACCATCCTGCACGAACAAGGCTGGAA
CTCCGACATCATCGAGCGCCAGCTCGCGCACCTGGAGCGGAACAAGGTCAAAGCCGCCTACAACCATGCCGGCTACCTCA
AGGAACGCCGGGAGATGCTCCAGGCCTGGGCCGATTACCTCGACCTTCAACGTGACAAAAAGGCGTAA

Protein sequence :
MPLSDVKIRTSKPLDKPYKLQDGKGLYLEIRPTGAKFWRYRYWTSPTKDGIYTIGEYPDVSRAEARAERERVRLLVKEGK
NPTAEKKLDKLRSQKETATTLAVVAEEWKVVNWPHWSETYRKQVEKHLQRDLLDEYGELPIREVTSAQLLAAIRKIDERG
APSIARLVRQWAGSIFRHAIATLRADSDPTYPLRGALRMPPTRHNAHLSADELPGFMKALDAYKGFGLTRLAVNLQMLTL
VRTQELRLAEWTEFDLDAAEWRIPAEKMKMRDPHIVPLPKQAVAIMRELEPLTGRRRWVFPNIRNHDTGMTNTTILRVIE
ILGYKGRATGHGFRATASTILHEQGWNSDIIERQLAHLERNKVKAAYNHAGYLKERREMLQAWADYLDLQRDKKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 5e-76 46
ECs4534 NP_312561.1 integrase Not tested LEE Protein 5e-76 46
int AAC31482.1 CP4-like integrase Not tested LEE Protein 4e-76 46
int ACU09430.1 integrase Not tested LEE Protein 4e-76 46
aec33 AAW51716.1 Int Not tested AGI-3 Protein 3e-76 46
int AAD44730.1 Int Not tested SHI-2 Protein 1e-75 46
int CAC39282.1 integrase Not tested LPA Protein 4e-76 46
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 5e-75 46
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 6e-75 46
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 6e-75 46
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 2e-73 44
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 2e-67 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NH8B_1979 YP_004847208.1 phage integrase family protein VFG0783 Protein 2e-76 46
NH8B_1979 YP_004847208.1 phage integrase family protein VFG0598 Protein 3e-75 46