Gene Information

Name : fliP (NH8B_1202)
Accession : YP_004846442.1
Strain : Pseudogulbenkiania sp. NH8B
Genome accession: NC_016002
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1227351 - 1228097 bp
Length : 747 bp
Strand : +
Note : -

DNA sequence : 
ATGAAACGTTTTCTTGTTTTCTCCGGCCTGCTGCTGGCAGGCCTGTTTCCGCTGCTGGCCGACGCTGCCGGTCTGCCGCT
GATGAACAGCACGCCGGCCGCCGGCGGCGGGCAGAGCTATTCACTCAGCCTGCAGATGCTGCTGTTCATGACGGCACTGT
CGTTCATTCCGGCCCTGCTGCTGATGATGACCTCGTTCACCCGCATCATCATCGTGCTGTCGTTGCTGCGCCAGGCCATG
GGCACGATGCAGGCGCCGCCCAACCAGGTGCTGGTCGGGCTGGCGCTGTTTTTGACGCTGTTCGTGATGGGGCCGACCTT
CGACCAGGTGTACAGCAAGGCCTGGGTGCCGTTCTCCGAGGACAAGATCGGCTTTGCCCAGATGCTGGAGGAGGGCAGCA
AGCCGATGCGTGAGTTCATGCTGAAGCAGACGCGCGAGAAGGATCTGGCATTTTTCATCGAGGTATCGCAGTCGCCGGCG
CCGCCCACCCCGGCCGAGGTGTCGATGAAGACCCTGATTCCGGCCTTCGTGATCAGCGAGCTGAAGACGGCGTTCCAGAT
CGGCTTCATGGTCTTCATCCCGTTCCTGATCATCGACCTGGTGGTGGCCAGCATCCTGATGGCAATGGGGATGATGATGG
TATCGCCGGTGATCATCTCCCTGCCGTTCAAGCTGATGCTGTTTGTGCTGGTGGACGGCTGGACCTTGCTGATGGGGTCG
CTGGTACGGAGTTTCTACACCGGATGA

Protein sequence : 
MKRFLVFSGLLLAGLFPLLADAAGLPLMNSTPAAGGGQSYSLSLQMLLFMTALSFIPALLLMMTSFTRIIIVLSLLRQAM
GTMQAPPNQVLVGLALFLTLFVMGPTFDQVYSKAWVPFSEDKIGFAQMLEEGSKPMREFMLKQTREKDLAFFIEVSQSPA
PPTPAEVSMKTLIPAFVISELKTAFQIGFMVFIPFLIIDLVVASILMAMGMMMVSPVIISLPFKLMLFVLVDGWTLLMGS
LVRSFYTG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 4e-33 46
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 4e-33 44
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-33 43
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-33 43
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-33 43
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 9e-30 43
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 3e-32 43
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 9e-30 43
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 9e-30 43
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-34 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-34 43
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 1e-23 42
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 1e-23 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 9e-33 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 9e-33 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-33 42
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 1e-24 42
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 1e-24 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-31 42
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-31 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 5e-33 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 4e-34 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 5e-34 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 5e-34 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_004846442.1 flagellar biosynthetic protein FliP VFG2338 Protein 1e-67 67
fliP YP_004846442.1 flagellar biosynthetic protein FliP VFG2494 Protein 3e-67 65
fliP YP_004846442.1 flagellar biosynthetic protein FliP VFG1259 Protein 9e-63 61
fliP YP_004846442.1 flagellar biosynthetic protein FliP VFG2016 Protein 4e-62 60
fliP YP_004846442.1 flagellar biosynthetic protein FliP VFG0188 Protein 2e-35 45
fliP YP_004846442.1 flagellar biosynthetic protein FliP VFG0394 Protein 4e-32 44
fliP YP_004846442.1 flagellar biosynthetic protein FliP VFG0519 Protein 1e-33 43
fliP YP_004846442.1 flagellar biosynthetic protein FliP VFG0044 Protein 2e-33 43