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Name : clpV (NH8B_1131) Accession : YP_004846375.1 Strain : Pseudogulbenkiania sp. NH8B Genome accession: NC_016002 Putative virulence/resistance : Virulence Product : type VI secretion ATPase, ClpV1 family Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1157291 - 1159918 bp Length : 2628 bp Strand : + Note : - DNA sequence : ATGTCGGTATCCCTGAAATCCCTGATCGAGCGCCTGACGCCGCTGGCGCGGCAGAGTGTGGAGCAGGCCGCCAGCCGCGC CTTGTCCCGTACCCACTACGAGATCGAGATTGAGCATGTGCTGTTGACCCTGCTCGACCAAGACATGAATGCCGCCCGCG CCGCCTTACCGGCAGCCGGCATCGATCTGGCCGATTTGCAACATGGGCTGGAGGGTGCTCTGGATGGCTTCCGTACTGGT AATACCCGCAACCCGGTGCTGTCGGCCTGGTTGCCCAAGTGGCTGGAGAAAGCCTGGCTGCTGGCCAGCGCGGAGTTCGG TCAGGAGAGTGTGTCCACGCTGGATTTGCTGTTGGCGCTGTTGCGTGATGAATCGCTGCGTCCGGCGGTGCAAAGCGGCT GCCCGGCCCTGCTGCGCGTCGAAGCGGGTCGCTTGCAACCGGCTTACGCCGCGTTGCGCCAGCATGGCGGGGAGGGCGGC GGGCCGGTGGCGGCCACCGAGCACGATCAGCCGGCGGAGATGCCGGCCGGTAGGGTCCGCAGCGGCGTGGCACTCGACAA ATACACCATCGACCTGACCGCCCAGGCGCGTGCCGGCAAGATCGATCCGGTGCTGGGGCGCGATGGCGAGATCCGCCAGA TGATCGACATCCTGATGCGCCGCCGACAGAACAACCCCATCCTGACCGGCGAGCCCGGCGTGGGCAAGACCGCGGTGGTG GAAGGGCTGGCGCGCAAGATCGTGCACGGCGAGGTGCCGCCGGTATTGGCCGGTGTCTGTCTGCGCACACTGGACCTGGG GCTGTTGCAGGCCGGTGCCAGTGTGAAGGGGGAGTTCGAATACCGTCTGCGTCAGGTGATCGACGAGGTGAAGGCGAGCC CGGTGTCCATCATCCTGTTCATCGACGAGGCGCACACGCTGATCGGCGCCGGCGGCGCGGCCGGTCAGAACGACGCGGCC AACCTGCTCAAGCCGGCGCTGGCGCGTGGCGAGCTGCGCACCATCGCGGCCACCACCTGGGCCGAGTACAAGAAGTATTT CGAGAAGGACGCCGCCTTGGCGCGCCGCTTCCAGGTGGTGAAGGTGGAGGAGCCGGCGCCGGAGGTGGCGGTGCAGATGG TGCGCGGGCTGACGCACGCCATGGCCACCCATCATCAGGTGGAAATCCTCAACGAGGCGGTCGCCGCCGCCGTGCATCTG TCGAGTCGCTACATCACCGGCCGCCAGTTGCCGGACAAGGCCATCAGCGTGCTGGATACCGCCTGCGCCCGCGTGGCGCT GTCGCGCGCCGGCAAGCCGGGACCGATCGAGGACGTGGCGGTGCTGATCGCCAATGCCGAGCGCGAGATTGCCGCCTTGC AGCGCGAGGAGGGCCATGCCGAGCGTATCGCCGAGCTGGAAGCCCGGCGCGGCGAGTTGCAGGCCGACCTGGAGCGCCTG CACACGGCCTGGGAGGCGCAGCAGCAACTGGTGGCCGAGATTGACGAGCTGAAACAGCAGCAGGGGGAGGTTAAGCCAGC CAAGGGCAAGAAGGTCAGCCCGCTGCAGGCCAAGCGCCAGGCTTTGCGTGAGCTGCACAAGCAGCAGCCGCTGGCGTTCG AGTGCGTCGACGAGAGTGTGATCGCCGACGTGATCGCCGGCTGGACCGGTATCCCGCTGGGGCGCATGGTCAGCAACGAG CTGGCTCAGGTACAGCAGCTGGCGCGGCTGTTGGGGGAACGGGTGATCGGCCAGGATCACGCGCTCGAGCAGATCGCCGA GCGGGTGCAGATTGCCAAGGCCGGCCTGGAAGACCCGGGCAAGCCCAAGGGGGTGTTCCTGCTGGTGGGGCCATCCGGCG TCGGCAAGACCGAGACCGCGCTGGCGCTGGCCGAGGCCTTGTACGGCGGCGAGCGCAATCTCATCACCATCAATATGTCG GAATACCAGGAGGCGCACAGCGTGTCCGGGCTCAAGGGCTCACCGCCGGGCTATGTCGGCTATGGAGAGGGTGGAGTGCT GACCGAGGCGGTACGCCGCAAGCCGTATTCGGTGGTGTTGCTGGACGAGGTGGAGAAGGCGCATCCGGACGTGCTGGAGC TGTTTTTCCAGGTGTTCGACAAGGGGGTGCTGGAGGACAGCGAAGGGCGCGAGGTGGATTTCAAGAACACCATCATCCTG TTGACGTCGAACGCCGGCTCCGAGTTGGTGATGCGTGCCTGCGAGCACGGTGTGACGGTGGAAGGCGAGACGCGCGAGCC GACGCCGGATGACCTGGTGGAAATTCTACGGCCCACCCTGCAGCAGGTGTTCAAACCGGCCTTCTTGGGACGCTTGGCCA TCGTGCCGTACTTCCCGATCGGCGACGAGGTGTTGCACGCCATCGTGGGTCTGAAGCTGGACAAAATCCGCCAGCGCATC GCGGACAACCACGGTGCCAAGGTGGAGTTTCCGGATGAGCTGGCAGGCATCATGGCGGCGCGTTGCCTGGACGTGGACAG CGGTGCGCGCAACGCCGACGCCATCCTCACACGCACGTTGCTGGCACAGATTTCGAGCGACCTGCTCGCCCGCATGGCCA GCGGCAAACCGGTGAAGAAGATTGCTGTGGCGCTCAAGGGCGAGCAGCTCAAGGTTCGCGTCAGCTAG Protein sequence : MSVSLKSLIERLTPLARQSVEQAASRALSRTHYEIEIEHVLLTLLDQDMNAARAALPAAGIDLADLQHGLEGALDGFRTG NTRNPVLSAWLPKWLEKAWLLASAEFGQESVSTLDLLLALLRDESLRPAVQSGCPALLRVEAGRLQPAYAALRQHGGEGG GPVAATEHDQPAEMPAGRVRSGVALDKYTIDLTAQARAGKIDPVLGRDGEIRQMIDILMRRRQNNPILTGEPGVGKTAVV EGLARKIVHGEVPPVLAGVCLRTLDLGLLQAGASVKGEFEYRLRQVIDEVKASPVSIILFIDEAHTLIGAGGAAGQNDAA NLLKPALARGELRTIAATTWAEYKKYFEKDAALARRFQVVKVEEPAPEVAVQMVRGLTHAMATHHQVEILNEAVAAAVHL SSRYITGRQLPDKAISVLDTACARVALSRAGKPGPIEDVAVLIANAEREIAALQREEGHAERIAELEARRGELQADLERL HTAWEAQQQLVAEIDELKQQQGEVKPAKGKKVSPLQAKRQALRELHKQQPLAFECVDESVIADVIAGWTGIPLGRMVSNE LAQVQQLARLLGERVIGQDHALEQIAERVQIAKAGLEDPGKPKGVFLLVGPSGVGKTETALALAEALYGGERNLITINMS EYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFFQVFDKGVLEDSEGREVDFKNTIIL LTSNAGSELVMRACEHGVTVEGETREPTPDDLVEILRPTLQQVFKPAFLGRLAIVPYFPIGDEVLHAIVGLKLDKIRQRI ADNHGAKVEFPDELAGIMAARCLDVDSGARNADAILTRTLLAQISSDLLARMASGKPVKKIAVALKGEQLKVRVS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-150 | 50 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 7e-137 | 44 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 5e-137 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpV | YP_004846375.1 | type VI secretion ATPase, ClpV1 family | VFG2076 | Protein | 2e-170 | 50 |
| clpV | YP_004846375.1 | type VI secretion ATPase, ClpV1 family | VFG2084 | Protein | 6e-142 | 44 |
| clpV | YP_004846375.1 | type VI secretion ATPase, ClpV1 family | VFG0079 | Protein | 7e-99 | 41 |
