Gene Information

Name : NH8B_1046 (NH8B_1046)
Accession : YP_004846292.1
Strain : Pseudogulbenkiania sp. NH8B
Genome accession: NC_016002
Putative virulence/resistance : Unknown
Product : transposase IS3/IS911 family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 1054946 - 1055332 bp
Length : 387 bp
Strand : -
Note : -

DNA sequence :
ATGACTCACACTAACAAACCCTCCACCGAGGTTCTGGGGCCGGAGCGCCGTCGCCGCTGGTCTGCAGAAGAAAAGCTGGC
CATGGTTAGAGAAAGCTTCGAACCCGGCCAGACGGTGTCGCTGGTGGCACGACGCCACGGCATCAATCCGAATCAGCTCT
TCCATTGGCGCAAGCTTCACCAGGATGGCAGCCTGTCTGCAGTCAGTGCCGGCGAAGCGGTAGTACCCGCCTCGGAGTTG
GCCGAAGCGATGAAGCAAATCCGCGAGCTGCAGCGCCTGCTGGGCAAAAAGACCATGGAAGCGGAGATTCTTAAGGAAGC
CGTGGAGGTCGCCCGCTCGCGAAAATGGATTGCGCGCTCGCCCTTGTTATCGGAGGACGACCAGTGA

Protein sequence :
MTHTNKPSTEVLGPERRRRWSAEEKLAMVRESFEPGQTVSLVARRHGINPNQLFHWRKLHQDGSLSAVSAGEAVVPASEL
AEAMKQIRELQRLLGKKTMEAEILKEAVEVARSRKWIARSPLLSEDDQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
insC YP_854262.1 IS2 transposase Not tested PAI I APEC-O1 Protein 1e-26 71
insC AAZ04431.1 IS2 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 7e-27 71
c5196 NP_757044.1 transposase insC Not tested PAI II CFT073 Protein 1e-26 71
tnpG AAD44740.1 TnpG Not tested SHI-2 Protein 1e-39 69
unnamed AAL57520.1 IS2 transposase Not tested LEE Protein 1e-39 69
st02 CAC81840.1 ST02 protein Not tested LEE II Protein 1e-39 69
ECO26_5247 YP_003232129.1 insertion sequence 2 OrfA protein Not tested LEE Protein 2e-39 69
S3188 NP_838471.2 insertion sequence 2 OrfA protein Not tested SHI-1 Protein 2e-39 69
S4060 NP_839229.2 insertion sequence 2 OrfA protein Not tested SHI-2 Protein 2e-39 69
SF2984 NP_708758.3 IS2 ORF1 Not tested SHI-1 Protein 2e-39 69
aec50 AAW51733.1 Aec50 Not tested AGI-3 Protein 1e-39 69
S4049 NP_839217.2 insertion sequence 2 OrfA protein Not tested SHI-2 Protein 6e-39 68
SF3709 NP_709448.3 IS2 ORF1 Not tested SHI-2 Protein 5e-39 68
SF3722 NP_709461.3 IS2 ORF1 Not tested SHI-2 Protein 5e-39 68

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NH8B_1046 YP_004846292.1 transposase IS3/IS911 family protein VFG0648 Protein 5e-40 69
NH8B_1046 YP_004846292.1 transposase IS3/IS911 family protein VFG0622 Protein 1e-39 68
NH8B_1046 YP_004846292.1 transposase IS3/IS911 family protein VFG0609 Protein 1e-39 68