|
Name : NH8B_1001 (NH8B_1001) Accession : YP_004846247.1 Strain : Pseudogulbenkiania sp. NH8B Genome accession: NC_016002 Putative virulence/resistance : Unknown Product : prophage CP4-like integrase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0582 EC number : - Position : 1004409 - 1005719 bp Length : 1311 bp Strand : - Note : - DNA sequence : ATGGCGTTGACGAAGGTAGCGATAGACAGCCTTAGCCCGCGAGCTGATGGCAAGCCGCTGAAGGTGCCAGATGGGCAAGG CCTTTATGTGTGGGTGATGCCAACCGGCGCGAAGTACTGGCGCCTGAAGTACCGGTTTGGCGGCAAAGAGAAGTCCCTAG CCATCGGTGTCTATCCGGAAGTGTCAATCAAGGAGGCCCGCCAAAAAAAGGATGCCGCACGCCGCCTGCTTGCTGATGGC GTTGACCCAGGCGAGAAAAAAAAGGCGATCAAGCGGGATCAGACCATAGAGGACGCATCGAGCTTTAGGGCCGTGGCCAT CGAGTGGCACGAAAAAATGGCCGCGGAGTGGGCACCACGACATGCCGCCGCCGTCCTCCGCAGTCTTGAGATGTACCTCT TCCCGGCTCTGGGCGACCGCCCAATTGCCCAGATCACAGCCATGGAACTAATGCTGGAGCTGCGGAAAGTCGAGCAACTG GGCCTGCACGATACAACTAAGCGCCTGCGCGAGCGATGCACCGCAATTTTCCGGCGGGCGGAAGTGACCGGCCGAGCATC GTCAAACCCTGCGGCGGCGCTGGTTGACGAGTTTATTTCGCCAGTATCAGCCCCTCAGCCAGCGCTTGAGCAGGAGGACT TGCCAGCGTTCCTTGATGCCCTGTCAACCACCGATCGCATCACCCTGCAAACCAAGTACCTAGTGCAACTCATCATGATC TTGTTTACCCGCATCGGCGAAACCGTACGCGCGGAATGGGATCACATAGACCTTGAGGCTGGCGTATGGGAAATCCCGCC GGAAACACGGAAGCTGAAGCGCAAGCTGATGGCAAATGCCAGCGCGCATGTCGTCCCCCTGCCCCGCCAGGCCGTTGAAA TTTTCCGCCAGTTGCAGGCGTTCAAACTGGGTGACAGCAACTACGTGTTCCCAAGCTTCCGCTATCGCAAGAACCATATG AGCGAGGCCACGCCGCTGAAGGCGTATGAGCGCATGGGATACGGCGGCAACAATAAGGCACATGGCCATGTTGTCACTCA TGGTTTCCGCGCGACCGCATCGACGATATTGAACGAGGCCGGCTTCAACCCAGACGCCATCGAGCGCCAGCTATCGCACA AGGAGCCAAACAAGGTCCGCGCGGCATATAACCGGGCCAAATACCTGGAGGAGCGCCGGAAAATGCTGCAGTGCTGGGCG GACTATCTGGACAAAATGGCAACTGGAGAGCAGACGCCGTCGCTGCAGGTAGCCGTAAATACAAGAGTGGAGCCTGAACC ACCCCCTATGGCAGGTGGCAGCAATCCCTGA Protein sequence : MALTKVAIDSLSPRADGKPLKVPDGQGLYVWVMPTGAKYWRLKYRFGGKEKSLAIGVYPEVSIKEARQKKDAARRLLADG VDPGEKKKAIKRDQTIEDASSFRAVAIEWHEKMAAEWAPRHAAAVLRSLEMYLFPALGDRPIAQITAMELMLELRKVEQL GLHDTTKRLRERCTAIFRRAEVTGRASSNPAAALVDEFISPVSAPQPALEQEDLPAFLDALSTTDRITLQTKYLVQLIMI LFTRIGETVRAEWDHIDLEAGVWEIPPETRKLKRKLMANASAHVVPLPRQAVEIFRQLQAFKLGDSNYVFPSFRYRKNHM SEATPLKAYERMGYGGNNKAHGHVVTHGFRATASTILNEAGFNPDAIERQLSHKEPNKVRAAYNRAKYLEERRKMLQCWA DYLDKMATGEQTPSLQVAVNTRVEPEPPPMAGGSNP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| intB | CAD42017.1 | bacteriophage P4 integrase | Not tested | PAI II 536 | Protein | 4e-61 | 42 |
| int | AAD44730.1 | Int | Not tested | SHI-2 | Protein | 1e-72 | 41 |
| int | CAC39282.1 | integrase | Not tested | LPA | Protein | 2e-73 | 41 |
| aec33 | AAW51716.1 | Int | Not tested | AGI-3 | Protein | 2e-73 | 41 |
| int | AAC31482.1 | CP4-like integrase | Not tested | LEE | Protein | 5e-72 | 41 |
| int | ACU09430.1 | integrase | Not tested | LEE | Protein | 5e-72 | 41 |
| intL | NP_290239.1 | integrase for prophage 933L and the LEE pathogenicity island | Not tested | LEE | Protein | 7e-72 | 41 |
| ECs4534 | NP_312561.1 | integrase | Not tested | LEE | Protein | 7e-72 | 41 |
| unnamed | AFX83955.1 | integrase | Not tested | SE-PAI | Protein | 1e-72 | 41 |
| ESA_03025 | YP_001439090.1 | hypothetical protein | Not tested | Not named | Protein | 3e-71 | 41 |
| int | AAD54663.1 | Sai integrase | Not tested | SHI-2 | Protein | 1e-71 | 41 |
| S4835 | NP_839238.1 | integrase | Not tested | SHI-2 | Protein | 1e-71 | 41 |
| SF3698 | NP_709437.1 | integrase | Not tested | SHI-2 | Protein | 1e-71 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| NH8B_1001 | YP_004846247.1 | prophage CP4-like integrase | VFG1536 | Protein | 2e-61 | 42 |
| NH8B_1001 | YP_004846247.1 | prophage CP4-like integrase | VFG0783 | Protein | 3e-72 | 41 |
| NH8B_1001 | YP_004846247.1 | prophage CP4-like integrase | VFG0598 | Protein | 6e-72 | 41 |
