Gene Information

Name : LSA_00560 (LSA_00560)
Accession : YP_004840477.1
Strain : Lactobacillus sanfranciscensis TMW 1.1304
Genome accession: NC_015978
Putative virulence/resistance : Resistance
Product : hypothetical protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 70695 - 71378 bp
Length : 684 bp
Strand : +
Note : -

DNA sequence :

ATGAAAGATAATCTAATTAAATTAGACGATGTTTCAAAGTATTATTTAGCGGGGAAGCAAAAGGTACAAATCTTAAAGCA
CGTTTCCCTGGAGATTGATAAAGAAGATTTTGCCGTTATCATGGGTCATTCTGGGTCTGGAAAAAGTACCTTGATTAATA
TTTTGGGATTTTTAGACCAAAAGTATGAAGGAACCTATGACTTTGCGGGAAAAAGTTATCAAAAGCAAAGTGACAACGTC
ATTTCGGAATTAAGGAATCGCAACATTGGCTTTATTTTTCAAAATTTTAAGTTAATGCATAATTTGACGGTCAAAGAAAA
TGTAGAAATCCCCTTGATTTATTCCAATCGGGATAGTGACCAAAACTTAGAGAAAGATTTAAATCAACTCTTAGATAGTT
TAGGAATTTTGGATAAAAAAGACAGTTATCCGTCCGAATTATCTGGTGGACAACAGCAACGGGTGGCAATTGCGCGTGCT
TTGATCAATCATCCTTCTATCATCATTGCGGATGAACCTACGGGAGCGCTAGATTCGCAAAATACCCAAGAAGTGATGGA
ACTATTTGAAACCTTAAATAAAACGAATAAAGTTACGATTATCATGGTGACTCACGATGACACGTTTGCTAATTTTGGAA
ATCGACTTTTTAAAGTGAATGACGGGGTGTTACATGAATCTTAA

Protein sequence :

MKDNLIKLDDVSKYYLAGKQKVQILKHVSLEIDKEDFAVIMGHSGSGKSTLINILGFLDQKYEGTYDFAGKSYQKQSDNV
ISELRNRNIGFIFQNFKLMHNLTVKENVEIPLIYSNRDSDQNLEKDLNQLLDSLGILDKKDSYPSELSGGQQQRVAIARA
LINHPSIIIADEPTGALDSQNTQEVMELFETLNKTNKVTIIMVTHDDTFANFGNRLFKVNDGVLHES

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
Spaf_1862	YP_006310627.1	amino acid ABC transporter ATP-binding protein	Not tested	FWisland_2	Protein	2e-29	42

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
LSA_00560	YP_004840477.1	hypothetical protein	NC_012469.1.7686878.	Protein	2e-43	46
LSA_00560	YP_004840477.1	hypothetical protein	CP001581.1.gene798.p	Protein	8e-39	44
LSA_00560	YP_004840477.1	hypothetical protein	CP001581.1.gene598.p	Protein	3e-34	41
LSA_00560	YP_004840477.1	hypothetical protein	NC_008702.1.4606598.	Protein	4e-36	41