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Name : lysS (LSA_04340) Accession : YP_004840814.1 Strain : Lactobacillus sanfranciscensis TMW 1.1304 Genome accession: NC_015978 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 420199 - 421725 bp Length : 1527 bp Strand : + Note : - DNA sequence : GTGGCTCAAGATCCTAAGCAAAAAAGAAAACAAGAAAGACAAATGAATGATCAAATGCGAGTTCGTCATGAAAAAATGGA TGAATTACGTGAAGAGGGTATTGATCCTTTTGGTCATGAGTTCAAACCAACCGCTTTAGCAAAAGACTTAACCGAAGAAT ATGACAAATATTCAAAAGAAGAATTAGAAGAAAAAGACGTTACTGTGACTATTGCAGGACGGATGGTTGCTAAGCGTGGT AGTGGTAAAGTTGGATTTGCTGATATTCTTGATCGTTCTGGAAGAATGCAAATCTATATTCGTAAGGATGTTGTTGGTGA AGAAAAATACCATATCTTTAAACGTTCTGATATTGGTGACTTCTTAGGTTTTACTGGAGAAGTAATTAAGACTGACATGG GTCAATTAACTGTTAGAGTTACGGACGTGATATTCTTATCAAAAGCACTTCGTCCGCTACCTGATAAATTCCATGGTTTA CAAAATAAAGAACAAAAATACCGTCAACGTTATCTTGATTTAATTTCTAACCGCGAGAGTTTTGATCGTTTTCAAAATCG TGCCAAAATTATCAGTGCAATTAGAAACTTCTTAGATAACGAGATGGACTTTACTGAAGTAGAGACACCTGTATTACATG CTTCTGCTGGTGGAGCTTCAGCTCGTCCATTTATTACTCATCATAACGCTTTAGATATTCAATTATATCTTCGGATTGCA CTCGAACTTCACCTTAAACGTTTAATCGTTGGGGGAATGGGACGAGTATACGAAATAGGCCGTGTTTTCAGAAATGAAGG AATGGATAAAGAGCATAACCCAGAATTTACTGAATTAGAAAGTTATGCTGCTTATTTTGATTTCAAAGATGTAATGGATG AAACTGAAGGAATTTTCCGTGCAGCCGCTAAGGTTGTTACAGATGATGGTAAAGTTACCTATCAAGGTAATGAAATTGAT TTAGATAAGCCATTTAAGCGAGTTCATATGGTCGATGCTATTAAAGAAGTTACTGGTGTTGATTTTTGGCCAGAAATGAC TATTGATGAAGCTCGTAAATTAGCTGATGAACATCACGTTAAATATGAATCATACTGGAAGGTTGGACACATCATTAATG AATTCTTTGAAGAATTCGTTGAATCAACCATTGTTGATCCTACATTTGTTTATGGACATCCAATTGAAATTTCTCCATTA GCTAAGAAAAATGCTGATGATCCTCGTTTCACTGATCGTTTTGAACTTTATATTCTTGGAAATGAATATGCTAATGCTTT TTCTGAATTAAATGATCCAATTGATCAAAGACAACGTTTTGAAGCACAAGTTGCAGAACGTGAGGCTGGAAATGATGAAG CTCAAGGTATTGATGAAGATTTCATTAAAGCTTTGGAATATGGAATGCCACCTACTGGAGGTTTAGGAATTGGAATTGAT CGTTTAGTAATGCTCTTAACTGATGCACCTTCTATTCGAGATGTTCTCTTATTCCCAACCATGCGTCCGGAAGAAGATCA AGATTAA Protein sequence : MAQDPKQKRKQERQMNDQMRVRHEKMDELREEGIDPFGHEFKPTALAKDLTEEYDKYSKEELEEKDVTVTIAGRMVAKRG SGKVGFADILDRSGRMQIYIRKDVVGEEKYHIFKRSDIGDFLGFTGEVIKTDMGQLTVRVTDVIFLSKALRPLPDKFHGL QNKEQKYRQRYLDLISNRESFDRFQNRAKIISAIRNFLDNEMDFTEVETPVLHASAGGASARPFITHHNALDIQLYLRIA LELHLKRLIVGGMGRVYEIGRVFRNEGMDKEHNPEFTELESYAAYFDFKDVMDETEGIFRAAAKVVTDDGKVTYQGNEID LDKPFKRVHMVDAIKEVTGVDFWPEMTIDEARKLADEHHVKYESYWKVGHIINEFFEEFVESTIVDPTFVYGHPIEISPL AKKNADDPRFTDRFELYILGNEYANAFSELNDPIDQRQRFEAQVAEREAGNDEAQGIDEDFIKALEYGMPPTGGLGIGID RLVMLLTDAPSIRDVLLFPTMRPEEDQD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 6e-110 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_004840814.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-110 | 46 |
