Gene Information

Name : rlmH (LSA_00190)
Accession : YP_004840442.1
Strain : Lactobacillus sanfranciscensis TMW 1.1304
Genome accession: NC_015978
Putative virulence/resistance : Unknown
Product : ribosomal RNA large subunit methyltransferase H
Function : -
COG functional category : S : Function unknown
COG ID : COG1576
EC number : -
Position : 22102 - 22581 bp
Length : 480 bp
Strand : +
Note : -

DNA sequence :
ATGAACATCAAATTAGTAGTAGTGGGAAAAGTTAAAGAAAAATATTTTCGTGATGGAATTTCGGAATATGAAAAACGACT
TTCTCGTTTTTGTAAATTTAAAATTGTGCAAGTTTCTGATGAAAAAGCACCTGAGTCTTTAAGTGAAGCTGAAATGGATG
AGGTAAAGCAAAAAGAAGGAGAACGGATTCTCAGTAAAATTGGTGATAAAGAATTTGTGTTTGCGTTAGCAATTTTAGGT
AAGCAATTTAGCTCCGAAGAATTCGCCGCTAAAATTAAAGATTTAACGACCTATGGCCATTCTGACATTACATTTGTGAT
TGGTGGATCACTTGGTCTTTCGGATGCAGTAATGAAACGAGCAAATGATACAATTTCATTTGGCCGTTTTACTTTGCCTC
ACCAATTGATGCGATTAGTATTTTGTGAACAAATTTATCGTGCATTTATGATTAATAATGGAAGCCCTTATCATAAATAA

Protein sequence :
MNIKLVVVGKVKEKYFRDGISEYEKRLSRFCKFKIVQVSDEKAPESLSEAEMDEVKQKEGERILSKIGDKEFVFALAILG
KQFSSEEFAAKIKDLTTYGHSDITFVIGGSLGLSDAVMKRANDTISFGRFTLPHQLMRLVFCEQIYRAFMINNGSPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 4e-39 52
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 4e-39 51
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 5e-39 51
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 4e-39 51
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 5e-39 51
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 4e-39 51
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 4e-39 51
unnamed ACL99851.1 hypothetical protein Not tested Type-V SCCmec Protein 3e-23 51
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 4e-39 51
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 4e-39 51
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 5e-38 51
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 7e-38 51
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 4e-39 51
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 4e-39 51
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 7e-38 51
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 4e-39 51
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 4e-39 51
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 4e-34 50
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 3e-38 49