Gene Information

Name : capB (LSA_12710)
Accession : YP_004841571.1
Strain : Lactobacillus sanfranciscensis TMW 1.1304
Genome accession: NC_015978
Putative virulence/resistance : Virulence
Product : tyrosine-protein kinase capB
Function : -
COG functional category : D : Cell cycle control, cell division, chromosome partitioning
COG ID : COG0489
EC number : 2.7.10.1
Position : 1218669 - 1219412 bp
Length : 744 bp
Strand : -
Note : -

DNA sequence : 
ATTATTATGAGTTTATTTAGAAAAAATAAAAAATTAGACGATAACACAATGAAAAACGGTGCCCCCTTGATTGTAGAATA
CAAACCTATTTCTCCAATTGCTGAACAATTTCGTACTGTTAGAACTAATATCAAATTTTCTATTGTTGCAAACCAAAATA
AAGTGGTTTCGATTACATCAGCTAATCCTTCAGAAGGAAAAAGTGTATTTATCTCTAATTTAGCTTGTACTTTTGCTGAA
CAAGGTGAAAAAACAATTTTGATTGATGCTGATATGCGTCGTCCGACTGTATATAAGACTTTTATGGTATCTAATCAAAA
TGGTTTATCAACGTATCTATCTGGAAATTCAAATCTAGATGAATCAATACTTAAAACTGATGTAGATAATTTAGATGTGA
TGGTAGGCGGGCCTGTTCCCCCTAATCCAGCAGAATTAATTGGTAGCGATAGATTTAAGAATTTATTAAATACATTGTCA
AAAGATTATGAATGGGTACTGATTGATACACCTCCTGTTAATTCAGCAACAGATGCTTCTTTGATTGCTGCCGCTTCTAA
TGGAACCATTATCGTAGTTCCTCAAGGAATTGCCGATAAAAGTTCAGTAAAAGTTGCTGTTGAACAACTTAAAAAAGTTA
ATGCAAAGATTCTTGGGTCTGTTATGAACCGTGTAAATGCCAAAGAATCTGCTGGTTATGGTGGATATTATGGTGGTGGA
TATTATGGAGTTGATGACAAATGA

Protein sequence : 
MIMSLFRKNKKLDDNTMKNGAPLIVEYKPISPIAEQFRTVRTNIKFSIVANQNKVVSITSANPSEGKSVFISNLACTFAE
QGEKTILIDADMRRPTVYKTFMVSNQNGLSTYLSGNSNLDESILKTDVDNLDVMVGGPVPPNPAELIGSDRFKNLLNTLS
KDYEWVLIDTPPVNSATDASLIAAASNGTIIVVPQGIADKSSVKVAVEQLKKVNAKILGSVMNRVNAKESAGYGGYYGGG
YYGVDDK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1B AAA64641.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 3e-36 42
SSP0061 YP_300151.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 5e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
capB YP_004841571.1 tyrosine-protein kinase capB VFG1298 Protein 1e-38 44