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Name : clpC (LSA_11430) Accession : YP_004841463.1 Strain : Lactobacillus sanfranciscensis TMW 1.1304 Genome accession: NC_015978 Putative virulence/resistance : Virulence Product : Negative regulator of genetic competence clpC/mecB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1103294 - 1105771 bp Length : 2478 bp Strand : - Note : - DNA sequence : CTGAAAGAAGGCTATTTAATGGAAGACTCATTAACACCTAGTGCAAAAAAAACACTTATGATTGCGCAAGAACAAGCACG TGGTTTTCAACATCAATCGGTTGGAACTGAGCATTTATTATTGGCATTATCCATTGAAAAAAGTGGAATCGCTTACCAAA CCTTAAATCAACTTTCTGTTACTGAACAGGATGTTAAAGAAGAAATTGAACAAATTGCCGGTTATGGTAATTTACAAAAC GACGGAACAACTTATTTGCCATATTCTCCTAAGATGCGTGACATTTTAAATTTAGCTGGTCAAATTGCTAAACAATATGG CAGCAAACGGGTTGGAACGGAACATTTGTTATTAGCGTTAACTAGCGAAAACGAAATCGTTTCATCAAGAATTCTTAACA GCTTAGGAATTTCTCCTGAAGATGTTCGTAAGATTACGATTCGGAAAATGGGGGTTCCTGATCAAGGAATACCAACTGAA TCTAAGAATGATGATAAAGAAAAAACACCAACGCTTGATTCATTTGCAAAAGATCTTACCAAAGCAGCTCGAGATGGCCA ACTAGATCCAATTATTGGGCGTGATCAAGAAGTTCGTCGTGCAATTCAAATTTTAAGTCGGCGGACGAAAAATAATCCAG TTCTAATCGGAGAGCCTGGGGTTGGTAAAACAGCAATTGCAGAAGGACTAGCTCAAAAAATTGTGGAAAAGAAAGTTCCT CAAGATATGACCAATAAACGTGTTATGGCCCTTGATATGGGAAGCCTAGTTGCAGGGACTAAATATCGTGGGGAATTTGA AAACCGACTTAAAAAAATTATTAATGAAATCAAAAGTAACGGACACGTTATTTTATTTGTTGATGAATTGCATACTTTAA TTGGAGCTGGAGGAGCAGAAGGTGCCATTGATGCTTCTAATATTTTAAAGCCAACTTTAGCTCGTGGTGAAATTCAGATG ATTGGGGCAACGACCTTAAATGAATACCAAAAGCATATTGAAGCTGATGCTGCTTTAGAACGTCGTTTTGCCACGGTACA AATTGAAGAACCTAGTGTCGATGAAGCAAAGAAAATTTTGGCTGGTTTACGACCAAAATACGAAGAATATCATCATGTGA AAATCACCGATGATGCGATTAATGCAGCTGTGGATTTATCAAGTCGTTACATTAGTGGTCGCTTTTTACCTGATAAAGCC ATTGACTTGATGGATGAAGCTGCTGCTAAAGTTCGAATTGATGCAATGGGAGATTCTACTGAATTAGTTAAGCAACAACG TGAACTTGATGAAGCAAGGTCGAATAAAGATCGTGCCATTGAAGAACAACGTTTTGACGATGCTGTAACTTTTCGTAGTC AAGAACAACAACTGGAAAAATCGGTTGCTGCTCTAATGGAAAAAGACAAAAAGAAACGTGAACATGAAAATAAGCAACAT AACTATAAACTCAAAGAAAACTCAGAGTCAGTTGCGCAAATTGTTGCTGAATGGACAGGCATTCCAGTTACGCACCTTAA GAAAACGGATGCAGATCGATTGGTTAACTTGGAAAATGTATTGCATAAACGGGTGATTGGGCAAGATGAGGCGGTTACTG CAGTTGCTAAAGCAGTAAGAAGAGCTCGAAGTGGATTGAAAGATCCTAATCGTCCAATTGGCTCATTTATTTTCCTTGGA CCTACTGGTGTGGGAAAAACGGAATTAGCTAAGGATTTAGCAGAAGAAATGTTTGGCTCAGAAGACGATGTAATTAGAGT CGATATGAGTGAGTACATGGAAAAATATTCTACTAGTCGTTTAGTTGGATCTGCTCCAGGATATGTTGGTTATGAAGAAG GAGGTCAACTAACTGAAAAAGTTAGAAAACATCCTTACTCCGTTGTTTTGCTTGATGAAGTGGAAAAAGCACATCCAGAT GTCTTTAACTTGCTCTTACAAGTTCTTGATGACGGATTTCTAACTGATTCTAAAGGTCGTAAAGTTGACTTTAAAAATAC AATTATCATTATGACATCTAATTTAGGTGCCACAGCGTTACGTGAACAAAAAACAGTTGGTTTTGATGCCAACCGTTCAG AAAACAACGATGCTGAAGTTAAACGAGTAATTCAAGAAAAGATGAAACAATTCTTCCGTCCTGAATTCTTAAACCGAGTT GATGAAACAGTTATTTTCCATAGTTTAACCGAATCAGAACTTCATCGAATTGTTAAATTGATGACCAAACGTTTAGTAGA TCGGGTTGAAAAACAAGGGTACATTTTAAAAATCACTCCTGCAGCCATTGATGCGGTTGCTAAAAAAGGTTACAACCCAG AATACGGAGCTCGTCCTTTAAGAAGAGCACTTCAAAGTGAAATCGAAGATCCTTTAAGTGATGCATTGTTAGCTGGTAAA TTTAAACCAGGTGATAAAATCACAATTGGAGCACAAAAAGGTAAAATTACGCTTACACATAAAACTCCAGTTATATAG Protein sequence : MKEGYLMEDSLTPSAKKTLMIAQEQARGFQHQSVGTEHLLLALSIEKSGIAYQTLNQLSVTEQDVKEEIEQIAGYGNLQN DGTTYLPYSPKMRDILNLAGQIAKQYGSKRVGTEHLLLALTSENEIVSSRILNSLGISPEDVRKITIRKMGVPDQGIPTE SKNDDKEKTPTLDSFAKDLTKAARDGQLDPIIGRDQEVRRAIQILSRRTKNNPVLIGEPGVGKTAIAEGLAQKIVEKKVP QDMTNKRVMALDMGSLVAGTKYRGEFENRLKKIINEIKSNGHVILFVDELHTLIGAGGAEGAIDASNILKPTLARGEIQM IGATTLNEYQKHIEADAALERRFATVQIEEPSVDEAKKILAGLRPKYEEYHHVKITDDAINAAVDLSSRYISGRFLPDKA IDLMDEAAAKVRIDAMGDSTELVKQQRELDEARSNKDRAIEEQRFDDAVTFRSQEQQLEKSVAALMEKDKKKREHENKQH NYKLKENSESVAQIVAEWTGIPVTHLKKTDADRLVNLENVLHKRVIGQDEAVTAVAKAVRRARSGLKDPNRPIGSFIFLG PTGVGKTELAKDLAEEMFGSEDDVIRVDMSEYMEKYSTSRLVGSAPGYVGYEEGGQLTEKVRKHPYSVVLLDEVEKAHPD VFNLLLQVLDDGFLTDSKGRKVDFKNTIIIMTSNLGATALREQKTVGFDANRSENNDAEVKRVIQEKMKQFFRPEFLNRV DETVIFHSLTESELHRIVKLMTKRLVDRVEKQGYILKITPAAIDAVAKKGYNPEYGARPLRRALQSEIEDPLSDALLAGK FKPGDKITIGAQKGKITLTHKTPVI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_004841463.1 | Negative regulator of genetic competence clpC/mecB | VFG0079 | Protein | 0.0 | 55 |
| clpC | YP_004841463.1 | Negative regulator of genetic competence clpC/mecB | VFG0080 | Protein | 2e-143 | 50 |
