Gene Information

Name : RHOM_03725 (RHOM_03725)
Accession : YP_004837799.1
Strain : Roseburia hominis A2-183
Genome accession: NC_015977
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 809498 - 810235 bp
Length : 738 bp
Strand : +
Note : COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGGATGCAGTGATGGATATGGAGCCGGCGATCTGCGCGGTCACAAAAGCAGAAAGTATAGAAAATACAGACGTAATCAC
AATGAGAAATATCAACAAATCATACCGCATGGGAACGCAGTCCCTCCATGTGCTCAAAGATGTGTCGCTGACCGTAAAGC
AGGGAGAATATCTTGCCATTTTGGGTCCTTCCGGTTCCGGAAAAAGTACGCTCATGAATATCATCGGGTGCATGGATGTG
ATGGACAGCGGAAACTATCTGCTGGATGGCGTGGCAATCGAACAGGCGAAAGAAAAGGAACTGGTAAAAATCCGTAATCA
GAAAATAGGCTTCATTTTTCAGAAATATCATCTGATTCCGACCTACAACGTGCTGCAGAATATTGTTATGCCGCTTCTGA
TGCGTGGAATGGGGCTCGCGGAGGCTCAGGAGGCGAGTATGGACACGATTGACATGCTCGGGCTTTCACAGCGTATCGGA
CATAAGCCCAATGAACTTTCCGGCGGACAGCAGCAGCGTGTAGCCATTGCGCGTGCACTGGTCGGAAAACCTGCCATTCT
GCTTGCAGATGAACCGACAGGCGCGCTCGATGTGAACAGCGGAAAAGAGGTATTGAAGCTTTTTGAAAATCTGAATCAGA
TGGGAAATACCATTGTGATGATTACCCATGATCTGAATGTGGCAAAACATGCGGGTCGTGTGGTAAGAATTGTGGACGGC
GAGATCTATGAAAACTGA

Protein sequence : 
MDAVMDMEPAICAVTKAESIENTDVITMRNINKSYRMGTQSLHVLKDVSLTVKQGEYLAILGPSGSGKSTLMNIIGCMDV
MDSGNYLLDGVAIEQAKEKELVKIRNQKIGFIFQKYHLIPTYNVLQNIVMPLLMRGMGLAEAQEASMDTIDMLGLSQRIG
HKPNELSGGQQQRVAIARALVGKPAILLADEPTGALDVNSGKEVLKLFENLNQMGNTIVMITHDLNVAKHAGRVVRIVDG
EIYEN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-33 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-34 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 9e-34 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-34 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RHOM_03725 YP_004837799.1 ABC transporter NC_012469.1.7686878. Protein 5e-51 50
RHOM_03725 YP_004837799.1 ABC transporter NC_008702.1.4606598. Protein 2e-43 45
RHOM_03725 YP_004837799.1 ABC transporter CP001581.1.gene798.p Protein 3e-41 44
RHOM_03725 YP_004837799.1 ABC transporter CP001581.1.gene598.p Protein 9e-37 42