Gene Information

Name : RHOM_00240 (RHOM_00240)
Accession : YP_004837109.1
Strain : Roseburia hominis A2-183
Genome accession: NC_015977
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 60733 - 61494 bp
Length : 762 bp
Strand : +
Note : COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGGCAGCATTACTTTGTGCAAAGGATCTTTGCAAAACATATGTAATTGATAAAAGGCAGAATAACGTATTAAAAAATGT
AAATCTTGAGGTAAATGAGGGGGAGATGGTGGCGATCATGGGACCGTCCGGCTCCGGAAAATCTACACTTTTGTATGCCA
TTTCGGGCATGGACCGGGCAACGAGCGGACAGGTGCTCTTTGAGGGGCAGGATCTGACGAAGCTTGGAGAAAAAGATCTG
GCAAAGCTCCGTCTGGATGAAATGGGATTCATTTTTCAACAGATGTATATGATGAAGAATCTGACGATTCTGGATAACAT
CGTGCTCCCGGCAGTGGAAAGCAGGAAATCAAAGGAGAGCAGGGAAGAGAAGCAGGCAAGAGGCGAGCAGCTGATGCGTA
AGCTCGGAATTATCGAAATTGCAGATAATGATATGAACGAGGTGTCCGGCGGACAGCTTCAGCGGGCATGTATATGCAGA
AGTATGATGAACCGCCCCAGACTGTTGTTTGCGGATGAGCCGACAGGTGCATTGAACCGCACATCCTCCAATGAGGTTAT
GGATGAACTTGTGAAGTTAAACGGCGAGGGGACAACGATTGTCATGGTGACGCATGATGCGAAAGTTGCCGCAAAATGCG
GCAGAGTCCTCTTTATCGTAGACGGCAATATCAAAGGGGAGTATACCAATTTGAAAAATATTACCGACGAAAAGGAACGG
GAAAGAGGACTGAATAACTGGCTGCTGGATCTGGGATGGTAG

Protein sequence : 
MAALLCAKDLCKTYVIDKRQNNVLKNVNLEVNEGEMVAIMGPSGSGKSTLLYAISGMDRATSGQVLFEGQDLTKLGEKDL
AKLRLDEMGFIFQQMYMMKNLTILDNIVLPAVESRKSKESREEKQARGEQLMRKLGIIEIADNDMNEVSGGQLQRACICR
SMMNRPRLLFADEPTGALNRTSSNEVMDELVKLNGEGTTIVMVTHDAKVAAKCGRVLFIVDGNIKGEYTNLKNITDEKER
ERGLNNWLLDLGW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-23 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-24 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-24 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-24 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RHOM_00240 YP_004837109.1 ABC transporter-like protein NC_012469.1.7686878. Protein 3e-35 45
RHOM_00240 YP_004837109.1 ABC transporter-like protein NC_008702.1.4606598. Protein 6e-26 41