Gene Information

Name : RHOM_01985 (RHOM_01985)
Accession : YP_004837451.1
Strain : Roseburia hominis A2-183
Genome accession: NC_015977
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 439118 - 439783 bp
Length : 666 bp
Strand : +
Note : COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGAGCATTTTGCAAACGACTGAACTAAAAAAATATTATGGTTCAAAGCCCAATATTACGAAAGCACTGGATGGCGTAAC
CCTCTCCATTGAGGATGGGGAGTTTGTGGCTATTGTTGGTACTTCTGGCAGTGGAAAATCCACACTTCTGAATATGATGG
GAGGATTGGATACTCCAACTTCCGGCAGTATCAAAGTAAAAGGAAAAGAATTGTCGAAATTCAAGGATGAACAGCTTACC
ATCTTCCGCAGACGCAACATCGGTTTTATCTTTCAGAATTACAATCTTGTTCCTGTGCTGAACGTCTATGAAAATATTGT
TTTGCCGGTGGAGCTGGATGGTGATACCGTTGATAAGCATTTCATGAATGAAGTCGTGAAAATGCTGGCTCTCGATGAAA
AGCTGAACAGTATGCCTAACAATCTGTCCGGTGGTCAGCAGCAGCGTGTAGCGATTGCCCGCGCCCTTGTTTCTAAACCG
GCTATCATCCTGGCCGACGAACCTACTGGAAATCTTGACAGCAGAACCAGCAGCGATGTATTGGGTCTTTTGAAAATGAC
CAGCCAGAAATTTCATCAGACCATTGTGATGATTACTCATAACAATGAGATCGCCCAGCTTGCCGACCGCATTATTCGTA
TTGAGGACGGCCGGATTTCCGAGTAA

Protein sequence : 
MSILQTTELKKYYGSKPNITKALDGVTLSIEDGEFVAIVGTSGSGKSTLLNMMGGLDTPTSGSIKVKGKELSKFKDEQLT
IFRRRNIGFIFQNYNLVPVLNVYENIVLPVELDGDTVDKHFMNEVVKMLALDEKLNSMPNNLSGGQQQRVAIARALVSKP
AIILADEPTGNLDSRTSSDVLGLLKMTSQKFHQTIVMITHNNEIAQLADRIIRIEDGRISE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-36 46
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-37 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-37 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-37 45
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 1e-33 41
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 4e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RHOM_01985 YP_004837451.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 2e-85 79
RHOM_01985 YP_004837451.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 8e-59 56
RHOM_01985 YP_004837451.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 7e-37 48
RHOM_01985 YP_004837451.1 ABC transporter ATP-binding protein NC_012469.1.7685735. Protein 6e-38 42