|
Name : RHOM_01865 (RHOM_01865) Accession : YP_004837427.1 Strain : Roseburia hominis A2-183 Genome accession: NC_015977 Putative virulence/resistance : Virulence Product : hypothetical protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG3451 EC number : - Position : 408743 - 411145 bp Length : 2403 bp Strand : + Note : COG3451 Type IV secretory pathway, VirB4 components DNA sequence : GTGCAGCCGGTAAAGACAAAGAAAAAACTGTCCCGCGCCGATAAGAAGCAGATCGAAGCGGCCATTGCCCGCGCTAACCG CACGGACAAAAAAGGAAAATCTGCGCAGGACAGTATCCCTTATGAACGGATGTGGCCGGACGGAATCTGCCGCATATCGG ACAGCCACTACACAAAGACCATCCAGTTTCAGGACATCAACTATCAGCTCTCCCAAAACGAAGATAAGACGGCAATCTTT GAGGGGTGGTGTGATTTCCTCAATTATTTTGACAGCTCGATTCATTTCCAGCTGTCTTTTTTGAACCTTGCGGCATCGGA GGAGACCTTTGCTAACTCCATTTCCATCCCGCCCCAGAGGGACGCCTTTGACAGTATCCGCGAGGAATACACCACAATGC TGCAAAATCAGCTGGCCAGAGGTAACAACGGTCTCATCAAGACCAAATACCTGACCTTTGGTATCGACGCGGACAGCATC AAAGCCGCCAAGCCCCGTCTGGAGCGTATTGAGACCGATATACTTAATAACTTCAAGCGTCTTGGTGTAGCTGCCAGAAC GCTGGACGGTAAAGAAAGGCTTTTTCAGCTTCATGCGGTATTCCACATGGATGAACAACTCCCGTTTCAGTTTGAATGGG ACTGGCTGGCTCCTTCTGGTCTGTCCACAAAGGATTTTATTGCACCAAGCTCCTTTGAGTTCCGCACCGGCAAGCAGTTC CGTATGGGTAAGAAATACGGAGCTGTTTCTTTTTTGCAGATTCTCGCACCGGAGCTGAATGACCGTTTGCTGGCTGATTT TCTGGATATGGAAAGTTCGCTCATTGTGAGTATGCACATTCAGTCGGTGGATCAGGTGAAAGCCATCAAAACGGTAAAGC GAAAGATTACCGACCTGGACCGCAGCAAGATCGAGGAACAGAAAAAAGCAGTCCGTGCCGGATACGACATGGACATCATT CCATCTGACCTTGCTACCTACGGCAGTGAAGCGAAAAAACTCTTGCAGGATTTGCAGAGCCGCAACGAGAGAATGTTCCT TTTGACCTTTCTGGTGCTGAACACAGCGGACAATCCCCGTCAGCTTGGCAACAACATCTTTCAGGCAGGCTCTATTGCCC AGAAGTATAACTGTCAGCTGACCAGGCTGGACTTCCAGCAGGAAGAAGGGCTGATGAGCTGTCTGCCTCTGGGTCTCAAT CAGATTGAGATTCAGCGAGGACTGACCACCAGTTCCACAGCTATCTTTGTGCCCTTTACTACGCAGGAACTGTTCCAGAA CGGGAAAGAAGCTCTGTACTACGGTATCAATGCTCTGTCCAACAACCTCATCATGGTGGACAGAAAGCTGCTGAAAAACC CCAACGGCCTGATTCTGGGTACGCCGGGTTCCGGTAAGTCCTTCAGCGCAAAACGAGAAATTGCCAACTGCTTTTTGCTT ACCAGTGATGATGTTATTATCTGTGACCCGGAAGCGGAGTACGCACCTCTGGTGGAGCGTCTGCATGGGCAGGTCATCAA GATCTCACCTACTTCAACCAACTATATCAATCCGATGGATCTGAATCTGGACTATTCGGATGATGAAAGCCCGCTGTCAC TCAAGTCTGACTTTATCCTCAGCTTGTGTGAGCTGATCGTGGGCGGTAAGGAGGGCTTGCAGCCGGTGCAGAAAACCATT ATTGATCGTTGTGTACGGTTGGTTTACAACGAATATCTCAATGACCCGAAGCCGGAGAATATGCCGATTTTGGAGGACCT TTATAACCTGTTGCGGGAGCAGGAAGAAAAAGAAGCTCAGTACATTGCAACGGCATTGGAAATCTATGTAACGGGTTCTT TGAATGTGTTCAATCATCAGAGCAATGTGGACATTGATAACCGGATTGTCTGCTACGACATCAAGGAACTGGGCAAGCAG CTTAAAAAAATCGGTATGCTGGTGGTACAGGATCAGGTGTGGAACCGCGTTACCATCAACCGTGCCGCCCACAAGTCCAC CCGTTACTACATCGACGAGATGCACCTGCTTTTGAAGGAGGAGCAGACCGCCGCCTATACGGTGGAAATCTGGAAGCGAT TCAGAAAATGGGGCGGTATTCCGACAGGTATCACCCAGAATGTCAAAGACCTTTTGAGCAGCCGCGAGGTAGAGAACATC TTTGAAAACTCGGACTTCGTGTATATGCTTAACCAGGCAGGCGGAGACCGTCAGATTTTGGCGAAGCAACTGGGGATTTC CACGCACCAGCTTAGCTATGTGACCCACTCCGGTGAGGGCGAGGGCCTGCTGTTCTATGGCTCCACGATCCTGCCGTTTG TGGATCACTTCCCGAAGAACACCGAACTTTACCGCATTATGACTACCAAACCCCAGGAACTGAAAAAGAAGGAGGATGAA TGA Protein sequence : MQPVKTKKKLSRADKKQIEAAIARANRTDKKGKSAQDSIPYERMWPDGICRISDSHYTKTIQFQDINYQLSQNEDKTAIF EGWCDFLNYFDSSIHFQLSFLNLAASEETFANSISIPPQRDAFDSIREEYTTMLQNQLARGNNGLIKTKYLTFGIDADSI KAAKPRLERIETDILNNFKRLGVAARTLDGKERLFQLHAVFHMDEQLPFQFEWDWLAPSGLSTKDFIAPSSFEFRTGKQF RMGKKYGAVSFLQILAPELNDRLLADFLDMESSLIVSMHIQSVDQVKAIKTVKRKITDLDRSKIEEQKKAVRAGYDMDII PSDLATYGSEAKKLLQDLQSRNERMFLLTFLVLNTADNPRQLGNNIFQAGSIAQKYNCQLTRLDFQQEEGLMSCLPLGLN QIEIQRGLTTSSTAIFVPFTTQELFQNGKEALYYGINALSNNLIMVDRKLLKNPNGLILGTPGSGKSFSAKREIANCFLL TSDDVIICDPEAEYAPLVERLHGQVIKISPTSTNYINPMDLNLDYSDDESPLSLKSDFILSLCELIVGGKEGLQPVQKTI IDRCVRLVYNEYLNDPKPENMPILEDLYNLLREQEEKEAQYIATALEIYVTGSLNVFNHQSNVDIDNRIVCYDIKELGKQ LKKIGMLVVQDQVWNRVTINRAAHKSTRYYIDEMHLLLKEEQTAAYTVEIWKRFRKWGGIPTGITQNVKDLLSSREVENI FENSDFVYMLNQAGGDRQILAKQLGISTHQLSYVTHSGEGEGLLFYGSTILPFVDHFPKNTELYRIMTTKPQELKKKEDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| EF2320 | NP_815976.1 | traE protein | Not tested | Not named | Protein | 0.0 | 74 |
| EFAU085_00716 | YP_008394240.1 | Type IV secretory pathway, VirB4 component | Virulence | Not named | Protein | 0.0 | 64 |
