Gene Information

Name : RHOM_16230 (RHOM_16230)
Accession : YP_004840282.1
Strain : Roseburia hominis A2-183
Genome accession: NC_015977
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 3451615 - 3452280 bp
Length : 666 bp
Strand : -
Note : COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGGAAATTATTAGTGTAGAACATTTGAAAAAATATTATGGTAAAGTGCCAAATCAAACAAAAGCGGTAAATGATATAAG
TTTTTCTGTACAGAAAGGAGAATTTGTTTCCATAATTGGTAGTTCTGGCAGTGGAAAATCTACGTTACTTAATATGATTG
GCGGATTAGACACTCCAACTTCAGGGAATGTATATATTTTGGGGAAAGATATTACTTCTATGTCTGAGGAAGAATTGACA
CTATTTCGTAGAAAAAATATAGGATTTATTTTTCAAAATTATAATTTGATTCCTGTTTTAAGTGTCTATGAAAATATAGT
TTTGCCAGTAGAACTTGACGGGAGAAAAATAGATAAAGATTTTTTAGATGATGTTTTAGATATACTTTCATTAAAGGAGA
AAATCTTTAATCTTCCGAATACGCTCTCTGGAGGACAACAACAGAGAGTGGCTATTGCTCGTGCTATTATATCGAAACCG
GCTGTTATATTAGCAGATGAACCAACTGGAAATTTGGATAGTAAAACGAGTGGAGATGTGATAAAGCTTTTAAGAACAGT
CAACCAGCGTTTCGAACAAACGCTGATTATGATTACACATAATTTGGAAATAGCTCAGTTGTCGGATCGCATAATAAATA
TTATAGATGGAAAGGTAGATATATGA

Protein sequence : 
MEIISVEHLKKYYGKVPNQTKAVNDISFSVQKGEFVSIIGSSGSGKSTLLNMIGGLDTPTSGNVYILGKDITSMSEEELT
LFRRKNIGFIFQNYNLIPVLSVYENIVLPVELDGRKIDKDFLDDVLDILSLKEKIFNLPNTLSGGQQQRVAIARAIISKP
AVILADEPTGNLDSKTSGDVIKLLRTVNQRFEQTLIMITHNLEIAQLSDRIINIIDGKVDI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-34 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-34 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-34 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-34 45
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 2e-29 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RHOM_16230 YP_004840282.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 9e-66 64
RHOM_16230 YP_004840282.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 2e-55 59
RHOM_16230 YP_004840282.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 3e-34 44
RHOM_16230 YP_004840282.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 1e-26 42