Gene Information

Name : RHOM_01070 (RHOM_01070)
Accession : YP_004837273.1
Strain : Roseburia hominis A2-183
Genome accession: NC_015977
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 254294 - 254998 bp
Length : 705 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGGCAGCAAAACAGAAAATTCTCATCGTAGATGATGACAATAATATCGCAGAACTGATTTCCCTGTATCTCACAAAGGA
ATGTTTCGATACCCGGATCGTCAATGACGGCGAGGAAGCCATGATCGCTTTTGATCAGTACAATCCGAATCTGATCCTGC
TCGATCTGATGCTTCCCGGCATGGACGGCTATCAGGTCTGCCGTGAGATCCGTGCGAAGGCAAATGTTCCGATCATTATG
CTGTCAGCCAAAGGCGAGATTTTTGACAAGGTACTCGGTCTGGAGCTCGGCGCGGACGATTACATGATGAAGCCGTTCGA
CTCCAAGGAGCTTGTCGCGCGCGTCAAGGCAGTGCTGCGCCGCTATCAGCCGGCAAAGCCGGAGGAACCTGCCGCAGAGT
TAAAATGCGTCAAGTACACGGATCTGGTGGTCAATCTCTCGAACTACTCCGTCATCTACATGGGGCAGGCCGTCGATATG
CCGCCAAAGGAACTGGAGCTTTTATATTTTCTTGCGGCTTCGCCGAATCAGGTTTTTACAAGAGAGCAGCTATTAGACCA
CATCTGGGGTTATGAATACATCGGCGACACGCGTACTGTGGATGTTCACGTGAAGCGTCTCCGCGAGAAGATCAAGGATC
ATGCCAACTGGAGCCTCGCAACGGTCTGGGGCATCGGCTACAAATTCGAGGTTCGTGACCTATGA

Protein sequence : 
MAAKQKILIVDDDNNIAELISLYLTKECFDTRIVNDGEEAMIAFDQYNPNLILLDLMLPGMDGYQVCREIRAKANVPIIM
LSAKGEIFDKVLGLELGADDYMMKPFDSKELVARVKAVLRRYQPAKPEEPAAELKCVKYTDLVVNLSNYSVIYMGQAVDM
PPKELELLYFLAASPNQVFTREQLLDHIWGYEYIGDTRTVDVHVKRLREKIKDHANWSLATVWGIGYKFEVRDL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 4e-36 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 4e-36 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RHOM_01070 YP_004837273.1 hypothetical protein NC_012469.1.7685629. Protein 2e-50 49
RHOM_01070 YP_004837273.1 hypothetical protein AE000516.2.gene3505. Protein 1e-46 49
RHOM_01070 YP_004837273.1 hypothetical protein HE999704.1.gene2815. Protein 2e-45 46
RHOM_01070 YP_004837273.1 hypothetical protein NC_012469.1.7686381. Protein 3e-43 45
RHOM_01070 YP_004837273.1 hypothetical protein NC_002952.2859905.p0 Protein 3e-46 44
RHOM_01070 YP_004837273.1 hypothetical protein NC_007793.3914279.p0 Protein 3e-46 44
RHOM_01070 YP_004837273.1 hypothetical protein NC_003923.1003749.p0 Protein 3e-46 44
RHOM_01070 YP_004837273.1 hypothetical protein NC_002745.1124361.p0 Protein 3e-46 44
RHOM_01070 YP_004837273.1 hypothetical protein NC_009782.5559369.p0 Protein 3e-46 44
RHOM_01070 YP_004837273.1 hypothetical protein NC_002951.3237708.p0 Protein 3e-46 44
RHOM_01070 YP_004837273.1 hypothetical protein NC_002758.1121668.p0 Protein 3e-46 44
RHOM_01070 YP_004837273.1 hypothetical protein NC_007622.3794472.p0 Protein 3e-46 44
RHOM_01070 YP_004837273.1 hypothetical protein NC_009641.5332272.p0 Protein 3e-46 44
RHOM_01070 YP_004837273.1 hypothetical protein NC_013450.8614421.p0 Protein 3e-46 44
RHOM_01070 YP_004837273.1 hypothetical protein AE015929.1.gene1106. Protein 4e-36 43
RHOM_01070 YP_004837273.1 hypothetical protein AF155139.2.orf0.gene Protein 4e-44 43
RHOM_01070 YP_004837273.1 hypothetical protein HE999704.1.gene1528. Protein 2e-29 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RHOM_01070 YP_004837273.1 hypothetical protein VFG1563 Protein 2e-36 41
RHOM_01070 YP_004837273.1 hypothetical protein VFG1702 Protein 1e-36 41