Gene Information

Name : RHOM_10265 (RHOM_10265)
Accession : YP_004839096.1
Strain : Roseburia hominis A2-183
Genome accession: NC_015977
Putative virulence/resistance : Resistance
Product : hypothetical protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2237557 - 2238240 bp
Length : 684 bp
Strand : -
Note : COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGAACTTATTAGAAGTCAAAAATATTTGTAAAACCTATGGCAGCGGAGAAACCACAGTCAAGGCTTTGAAAGATGTTAG
TTTTTCTGTTCCCAAAGGAGAATATGTGGCAATCGTTGGAGAATCCGGTTCTGGTAAAAGTACGTTGCTGAATATGATCG
GCGCATTGGACACGCCTACGTCGGGTAAGGTATTGATTGACGGCAAGGATATTTTTTCTATGAACGACAAGAAGTTGACC
GTCTTCCGTCGCAGAAATATCGGATTTATTTTTCAGGCGTTCAACCTTGTGCCAGAGCTTACGGTAGAGCAAAATATTAT
TTTTCCTGTACTGCTTGACTATCAGAAGCCGGACAAAAAATATCTGGAAGAACTGCTTACTGTTCTTAATCTGAAAGAAC
GCCGTAACCATTTGCCGAGCCAGTTATCCGGCGGCCAGCAGCAGAGAGTGGCGATTGGCCGCGCATTGATTACCCGTCCT
TCTCTGATTCTGGCAGACGAGCCAACAGGAAATTTGGACTCACAAAACAGCAGTGAGGTCATAGCATTGCTCAAAGAAAC
ATCGAAAAAATACGAGCAGACCATCATTATGATTACCCACAACCGCAGTATTGCGCAAACGGCAGACCGGGTATTACAGG
TATCGGATGGTACTTTGACTGATTTTGGGAGGTGCCGTGAATGA

Protein sequence : 
MNLLEVKNICKTYGSGETTVKALKDVSFSVPKGEYVAIVGESGSGKSTLLNMIGALDTPTSGKVLIDGKDIFSMNDKKLT
VFRRRNIGFIFQAFNLVPELTVEQNIIFPVLLDYQKPDKKYLEELLTVLNLKERRNHLPSQLSGGQQQRVAIGRALITRP
SLILADEPTGNLDSQNSSEVIALLKETSKKYEQTIIMITHNRSIAQTADRVLQVSDGTLTDFGRCRE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 1e-40 48
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-38 48
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-38 46
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-38 46
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-38 46
SARLGA251_00480 YP_005754062.1 ABC-type transport system ATPase Not tested Type-XI SCCmec Protein 6e-34 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RHOM_10265 YP_004839096.1 hypothetical protein CP001581.1.gene798.p Protein 1e-95 87
RHOM_10265 YP_004839096.1 hypothetical protein CP001581.1.gene598.p Protein 5e-59 55
RHOM_10265 YP_004839096.1 hypothetical protein NC_012469.1.7686878. Protein 1e-42 46
RHOM_10265 YP_004839096.1 hypothetical protein NC_008702.1.4606598. Protein 1e-36 43
RHOM_10265 YP_004839096.1 hypothetical protein NC_012469.1.7685735. Protein 7e-39 42