Gene Information

Name : SLG_30540 (SLG_30540)
Accession : YP_004836186.1
Strain : Sphingobium sp. SYK-6
Genome accession: NC_015976
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3299226 - 3300068 bp
Length : 843 bp
Strand : -
Note : -

DNA sequence :
ATGTATCACCAACTTGCCACCCGGTTCGGCCGCAACAGCCACCAGATCAGCGGGCGCGAGCCGCTCGACAACGAAGCGCT
GTATCGCCACGTCCCGTCCATCTTCGCCCGCGAGGCGCACGACAGCCGTTCCGAGCGGTATGTTTATGTCCCCACGATCG
ACATTGTGGAGGGATTGCGCAGGGAAGGATGGTTTCCATTCTTCGCCGTCCAGTCCGTCCCCCGCGATGGTGGTCGCCAC
GGCCACGCCAAGCATATGCTGCGTCTGCGCCGGGACGAGGGCATCGGCAAGCCCGAGGCCGCCGAGGTCATCATCGTGAA
CAGCCACGATGGCACGTCCGCTTATCAGATGTTCGCGGGAATGCTTCGCTTCGTCTGCACCAACAGCATGATCGCGGGCG
AGCGGTTCGAGGAGGTGCGGGTGCCGCACAAGGGCAATATCCAACACGACATAATCGAGGGTGTCTATACGGTTGCCGAG
GACTTCCCCCGGCTGATCGACGCCAGCGAGTCCATGAAGGATGTTCGCCTTTCCGAAGATGAGCGCCGTTTGCTGGCCGA
GGTTAGCCTAGTGGCGCGCTATGGTGAGGACGAAAGTCCGCTGCGCCCCGAGCAGATCATCGAACCGCGCCGCCGCGAGG
ATTCGGGCGACAGCCTGTGGACCACGTTCAACGTCATTCAGGAGAACGTCGTTCGAGGCGGCTTGCATGGCCACAGGCGC
AATGCCGAAGGCCGTATCCGGCGCAGCCGTTCCCGTCCGATCAACGGTATCGACCAGAATGTGACTCTCAACCGCGCGCT
CTGGACGCTGGCCGAAGGGATGCAACGCTTGAAGGCGGGATGA

Protein sequence :
MYHQLATRFGRNSHQISGREPLDNEALYRHVPSIFAREAHDSRSERYVYVPTIDIVEGLRREGWFPFFAVQSVPRDGGRH
GHAKHMLRLRRDEGIGKPEAAEVIIVNSHDGTSAYQMFAGMLRFVCTNSMIAGERFEEVRVPHKGNIQHDIIEGVYTVAE
DFPRLIDASESMKDVRLSEDERRLLAEVSLVARYGEDESPLRPEQIIEPRRREDSGDSLWTTFNVIQENVVRGGLHGHRR
NAEGRIRRSRSRPINGIDQNVTLNRALWTLAEGMQRLKAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF SG86 AAN62307.1 conserved hypothetical protein Not tested PAGI-3(SG) Protein 3e-58 48
S3199 NP_838482.1 hypothetical protein Not tested SHI-1 Protein 4e-55 48
SF2994 NP_708768.1 hypothetical protein Not tested SHI-1 Protein 4e-55 48
ECO103_3587 YP_003223444.1 hypothetical protein Not tested LEE Protein 3e-54 48
yafZ ADD91704.1 YafZ Not tested PAI-I AL862 Protein 4e-54 47
ORF_47 AAZ04456.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 3e-53 47
unnamed CAD66201.1 hypothetical protein Not tested PAI III 536 Protein 2e-53 47
yafZ YP_854321.1 hypothetical protein Not tested PAI I APEC-O1 Protein 4e-53 47
unnamed CAI43843.1 hypothetical protein Not tested LEE Protein 4e-54 47
c5156 NP_757004.1 hypothetical protein Not tested PAI II CFT073 Protein 4e-53 47
aec71 AAW51754.1 Aec71 Not tested AGI-3 Protein 4e-54 47
ORF C80 AAN62174.1 conserved hypothetical protein; associated with oriT region on plasmids Not tested PAGI-2(C) Protein 1e-56 46
yafZ CAE85199.1 YafZ protein Not tested PAI V 536 Protein 1e-56 46
unnamed CAD42096.1 hypothetical protein Not tested PAI II 536 Protein 2e-52 46
Z1215 NP_286750.1 hypothetical protein Not tested TAI Protein 7e-53 46
Z1655 NP_287158.1 hypothetical protein Not tested TAI Protein 7e-53 46
z1215 CAD33785.1 Z1215 protein Not tested PAI I 536 Protein 1e-53 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SLG_30540 YP_004836186.1 hypothetical protein VFG0658 Protein 2e-55 48
SLG_30540 YP_004836186.1 hypothetical protein VFG1676 Protein 1e-53 47
SLG_30540 YP_004836186.1 hypothetical protein VFG1615 Protein 1e-52 46
SLG_30540 YP_004836186.1 hypothetical protein VFG1526 Protein 6e-54 46