Gene Information

Name : SLG_03090 (SLG_03090)
Accession : YP_004833441.1
Strain : Sphingobium sp. SYK-6
Genome accession: NC_015976
Putative virulence/resistance : Virulence
Product : OmpR family two-component system response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 319133 - 319885 bp
Length : 753 bp
Strand : +
Note : -

DNA sequence :
ATGAAGCGCATGACCCGTGCCGAGCCCGCTGCGGAACGCACTTTCATCGCCCTTGTCGAGGATGACGAGGACATCAGCGA
ACTGGTGAGCGATCTGCTTGTCCGGGAAGGCTTCGAGGTGGGCGCCTGCCGCTCAGGCGCCGAGCTGGACCGGCTCAAGG
ACCGGCGCCGGGTGGATCTCGTGCTGCTGGACCTCATGCTCCCCGGCGAGGACGGCCTGTCCATCTGCCGCCGCCTCCAT
GCCGCGGCGCTGCCCATCCCTGTCATCATGATCACGGCGAAGGGCGACGACATCGATCGCATCCTCGGGCTGGAGATCGG
GGCCGATGATTATCTGCCCAAGCCCTTCAATCCGCGTGAACTCATTGCGCGCATCCGCGCGGTCCTGCGCCGGACGCGCG
AGGCGCACCGGCCATCGCCCGTGGCCGGCCGATGGTATCGCTTCGCCGGGTGGAGCCTGGATGCCGGGTCGCGGTTGCTG
CGCGATCCGGAGGGCGAGGCCGTGGAACTGACCGGGGGCGAGTTCGATCTCCTGATCGCCCTGCTCGATCATCCCCAGCG
CGTGCTGACGCGTGACCAGCTGCTCGACTGGACGCGGGGCCGCGATGCCGGTCCCTATGATCGCACGATCGACGTGCAGC
TGAGCCGCCTGCGCCGCAAGCTCGGCGATGATCCTCGCAGTCCGGTGATGATCCGCACCGTGCGCGGCGGCGGCTATCTG
TTCGCCCCGGCGGTCGAAACCGGCGGCGCCTGA

Protein sequence :
MKRMTRAEPAAERTFIALVEDDEDISELVSDLLVREGFEVGACRSGAELDRLKDRRRVDLVLLDLMLPGEDGLSICRRLH
AAALPIPVIMITAKGDDIDRILGLEIGADDYLPKPFNPRELIARIRAVLRRTREAHRPSPVAGRWYRFAGWSLDAGSRLL
RDPEGEAVELTGGEFDLLIALLDHPQRVLTRDQLLDWTRGRDAGPYDRTIDVQLSRLRRKLGDDPRSPVMIRTVRGGGYL
FAPAVETGGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 3e-26 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 6e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SLG_03090 YP_004833441.1 OmpR family two-component system response regulator CP000034.1.gene3671. Protein 9e-43 50
SLG_03090 YP_004833441.1 OmpR family two-component system response regulator NC_008702.1.4607594. Protein 8e-49 48
SLG_03090 YP_004833441.1 OmpR family two-component system response regulator CP001918.1.gene5135. Protein 9e-28 44
SLG_03090 YP_004833441.1 OmpR family two-component system response regulator CP000034.1.gene3834. Protein 2e-31 42
SLG_03090 YP_004833441.1 OmpR family two-component system response regulator CP001138.1.gene4273. Protein 9e-32 42
SLG_03090 YP_004833441.1 OmpR family two-component system response regulator BAC0533 Protein 4e-32 42
SLG_03090 YP_004833441.1 OmpR family two-component system response regulator NC_002695.1.915041.p Protein 2e-31 42
SLG_03090 YP_004833441.1 OmpR family two-component system response regulator CP000647.1.gene4257. Protein 4e-32 42
SLG_03090 YP_004833441.1 OmpR family two-component system response regulator CP004022.1.gene3215. Protein 7e-30 42
SLG_03090 YP_004833441.1 OmpR family two-component system response regulator AE000516.2.gene3505. Protein 3e-23 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SLG_03090 YP_004833441.1 OmpR family two-component system response regulator VFG1563 Protein 1e-26 41
SLG_03090 YP_004833441.1 OmpR family two-component system response regulator VFG1702 Protein 3e-26 41