Gene Information

Name : SLG_28880 (SLG_28880)
Accession : YP_004836020.1
Strain : Sphingobium sp. SYK-6
Genome accession: NC_015976
Putative virulence/resistance : Unknown
Product : putative transposase for insertion sequence element
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 3125520 - 3126425 bp
Length : 906 bp
Strand : +
Note : -

DNA sequence : 
ATGATCGCGTTTATCGACGAGCATCGCGGTGATTATGGGGTCGAGCCGATCTGCCGGGTTCTGCCGATCGCCCCATCCAC
CTACCATGAGCACCTGGCGCAGCGGCGCGATCCCTCGCGGCTATCTCCACGTGCTCAGCGTGATCAGATGTTGAAGCCGG
AGGTGGTGCGCGTCTTCACCGAGAACTTCGGCGTCTACGGCGTGCGGAAGGTGTGGCGACAGATGCGGCGCGAAGGCTTC
GATATCGCCCGATGCACGGTGGAACGGCTGATGCGCGATCTTGGCTTGCAGGGCGTGATCCGCGGTAAGCCGGTGCGCAC
GACGATGAGCGACAAGGCCGCGCCTTGCCCGCTCGATCAGGTGAACCGGCAGTTCCATGCGCCGGCACCGAACATGCTGT
GGGTCTCGGACTTCACTTACGTCGCGACGTGGTCGGGGTTCGTCTACGTGGCCCTCGTGATCGACGTCTATGCCCGCTAT
GTCGTGGGCTGGCGGGTGAGCAGGACGGCGCACGCCAGCTTCGTGCTGGATGCCCTCGAGCAGGCGATCCATGATCGGCG
TCCTGTCCATCGCGGTGGCCTGATCCACCACAGCGACCGCGGCAGCCAGTACGTCTCGATCAAGTATACCGAGCGCCTTG
TCGAAGCCGGGATCGAGCCATCGGTGGGCAGCGTAGGGGACAGCTATGACAACGCTTTGGCCGAGACGATCAACGGCCTT
TACAAGGCCGAGGTGATCCACCGGCGAGGTCCGTGGCGATCCTTTGAGGCAGTCGAATACGCCACGCTGGAATGGGTGGA
CTGGTTCAACAACCGCCGGCTTCTCGCGCCCATCGGCAATATACCACCGGCCGAAGCGGAGAAACGCTACTACGCCATGG
TGGACGACACTCCCACGGCCGCATAA

Protein sequence : 
MIAFIDEHRGDYGVEPICRVLPIAPSTYHEHLAQRRDPSRLSPRAQRDQMLKPEVVRVFTENFGVYGVRKVWRQMRREGF
DIARCTVERLMRDLGLQGVIRGKPVRTTMSDKAAPCPLDQVNRQFHAPAPNMLWVSDFTYVATWSGFVYVALVIDVYARY
VVGWRVSRTAHASFVLDALEQAIHDRRPVHRGGLIHHSDRGSQYVSIKYTERLVEAGIEPSVGSVGDSYDNALAETINGL
YKAEVIHRRGPWRSFEAVEYATLEWVDWFNNRRLLAPIGNIPPAEAEKRYYAMVDDTPTAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 1e-62 65
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 7e-63 65
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 5e-59 64
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 3e-72 64
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 2e-82 62
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 1e-81 62
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 6e-82 62
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 6e-82 62
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 6e-82 62
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 3e-84 62
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-84 62
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-84 62
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 9e-82 61
Z1221 NP_286756.1 transposase Not tested TAI Protein 5e-82 61
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 2e-83 61
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-83 61
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-84 61
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 2e-83 61
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 5e-81 60
Z1198 NP_286733.1 transposase Not tested TAI Protein 2e-81 60
Z1638 NP_287141.1 transposase Not tested TAI Protein 2e-81 60
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-59 60
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 6e-57 49
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 1e-42 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SLG_28880 YP_004836020.1 putative transposase for insertion sequence element VFG1602 Protein 3e-81 60