Gene Information

Name : SLG_28870 (SLG_28870)
Accession : YP_004836019.1
Strain : Sphingobium sp. SYK-6
Genome accession: NC_015976
Putative virulence/resistance : Unknown
Product : putative transposase for insertion sequence element
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3125197 - 3125523 bp
Length : 327 bp
Strand : +
Note : -

DNA sequence :
ATGAGCAAGACGACGAACAAGTTTGCACCGGAGGTTCGTGAACGGGCGGTCCGCATGGTGCTGGATCACGAAGGCGACCA
TCCGTCCCGCTGGGCGGCGATCACATCCATTGCCGAGAAGATTGGCTGTTCGGGGCACACGCTGCTGGAGTGGGTGAAAA
AGGCCGAGGTGAACAGCGGCAAGCGAGCCGGCGTGCCCACCGAGGTGGCTGACAAGCTCAAGGCGCTGGAGCGCGAGAAC
CGCGAGCTGCGCCAGGCCAACGAGATCCTGCGCAAGGCCTCCGCATATTTTGCCCAGGCGGAGCTCGACCGCCCGTTCAA
GCGATGA

Protein sequence :
MSKTTNKFAPEVRERAVRMVLDHEGDHPSRWAAITSIAEKIGCSGHTLLEWVKKAEVNSGKRAGVPTEVADKLKALEREN
RELRQANEILRKASAYFAQAELDRPFKR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1199 NP_286734.1 hypothetical protein Not tested TAI Protein 4e-24 57
Z1222 NP_286757.1 hypothetical protein Not tested TAI Protein 4e-24 57
Z1639 NP_287142.1 hypothetical protein Not tested TAI Protein 4e-24 57
Z1661 NP_287163.1 hypothetical protein Not tested TAI Protein 4e-24 57
IS629 CAI43820.1 hypothetical protein Not tested LEE Protein 1e-23 56
IS629 CAI43841.1 hypothetical protein Not tested LEE Protein 1e-23 56
S4062 NP_839231.1 IS629 orfA Not tested SHI-2 Protein 6e-20 56
IS629 CAI43908.1 hypothetical protein 1 Not tested LEE Protein 1e-23 56
unnamed CAD42084.1 hypothetical protein Not tested PAI II 536 Protein 4e-21 56
ECO103_3584 YP_003223442.1 IS629 transposase OrfA Not tested LEE Protein 2e-23 56
SF3706 NP_709445.1 IS629 ORF1 Not tested SHI-2 Protein 8e-21 56
unnamed AAL67399.1 TnpE-like protein Not tested PAI II CFT073 Protein 2e-21 56
c5168 NP_757016.1 hypothetical protein Not tested PAI II CFT073 Protein 2e-21 56
unnamed ADD91740.1 hypothetical protein Not tested PAI-I AL862 Protein 2e-21 56
c5214 NP_757062.1 hypothetical protein Not tested PAI II CFT073 Protein 2e-21 56
unnamed AAF09023.1 unknown Not tested SHI-O Protein 7e-22 56
S3184 NP_838467.1 IS629 orfA Not tested SHI-1 Protein 2e-21 56
tnpE AAD44738.1 TnpE Not tested SHI-2 Protein 7e-22 56
SF2979 NP_708753.1 IS629 ORF1 Not tested SHI-1 Protein 2e-21 56
IS629 CAC37925.1 hypothetical protein Not tested LEE Protein 1e-23 56
APECO1_3498 YP_854313.1 transposase; OrfA protein of insertion sequence IS629 Not tested PAI I APEC-O1 Protein 8e-20 56
ORF_36 AAZ04445.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 5e-20 56
ECO111_3775 YP_003236110.1 putative IS629 transposase OrfA Not tested LEE Protein 6e-22 55
Z4335 NP_289560.1 hypothetical protein Not tested OI-122 Protein 6e-22 55
ECO111_3720 YP_003236060.1 putative IS629 transposase OrfA Not tested LEE Protein 6e-22 55
unnamed AAL67404.1 R13-like protein Not tested PAI II CFT073 Protein 4e-19 54
c3596 NP_755471.1 hypothetical protein Not tested PAI I CFT073 Protein 5e-19 54
c5177 NP_757025.1 hypothetical protein Not tested PAI II CFT073 Protein 5e-19 54
r13 AAC61722.1 R13 Not tested PAI I CFT073 Protein 4e-19 54
ECUMN_3344 YP_002414020.1 transposase ORF A, IS629 Not tested Not named Protein 5e-19 54
CDC7B_2036 YP_005163477.1 hypothetical protein Not tested Not named Protein 8e-12 43
CDCE8392_1959 YP_005134490.1 hypothetical protein Not tested Not named Protein 3e-12 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SLG_28870 YP_004836019.1 putative transposase for insertion sequence element VFG0606 Protein 2e-21 56
SLG_28870 YP_004836019.1 putative transposase for insertion sequence element VFG0643 Protein 7e-22 56
SLG_28870 YP_004836019.1 putative transposase for insertion sequence element VFG1603 Protein 2e-21 56
SLG_28870 YP_004836019.1 putative transposase for insertion sequence element VFG1717 Protein 2e-19 54