Gene Information

Name : SLG_27120 (SLG_27120)
Accession : YP_004835844.1
Strain : Sphingobium sp. SYK-6
Genome accession: NC_015976
Putative virulence/resistance : Virulence
Product : putative ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2922854 - 2923537 bp
Length : 684 bp
Strand : -
Note : -

DNA sequence : 
ATGATGCTGCGCATGCGCGAACTCTCCCGCGTCTATCGCACCGACACGGTGCAGACGACGGCCCTCGATGCCATTGATCT
CGACATCGCGACTGGCGAGTTCGTCGCAATCATGGGCCCCTCGGGCTGCGGCAAGTCCACCCTGCTCAACATGATCGGCA
TGCTCGACAGCCCCACAGGCGGCTCCTACCTGTTCGACGGGCAGGAAGTCGCCGGCCTGTCCGAGACGAAGCTGGCGGTC
GTGCGCAAGGAGAATATCGGCTTCATCTTCCAGAGCTTCAATCTGGTCGACGAGCTCTCAGTGCGCGACAATATCGAGCT
GGCGCTGCTCTATCACAAGGTGGCGCCCTCCGAGCGCAAAGCGCGCGTGGAAGCTGTGATGGACCGGGTCGGCATCGCTC
ATCGGGCCAAGCATTTCCCCAGCCAGCTTTCCGGCGGCCAGCAGCAGCGCGTGGCGGTCGCCCGCGCGCTGGTCGCCGAG
CCCAAGCTCATCCTGGCGGACGAGCCGACGGGCAATCTCGACACCCAGCATGGCGAGGAAGTGATGCGCATGCTCCAGCA
GCTCAACGCGGAAGGCTCGACCATCGTCATGGTCACTCATTCGCCCGCCCATGCCGACTATGCCGGGCGCATCGTCAACA
TGCTCGACGGGCGCATCCTGCAGGAGCGCCGCCGGGCGGCGTGA

Protein sequence : 
MMLRMRELSRVYRTDTVQTTALDAIDLDIATGEFVAIMGPSGCGKSTLLNMIGMLDSPTGGSYLFDGQEVAGLSETKLAV
VRKENIGFIFQSFNLVDELSVRDNIELALLYHKVAPSERKARVEAVMDRVGIAHRAKHFPSQLSGGQQQRVAVARALVAE
PKLILADEPTGNLDTQHGEEVMRMLQQLNAEGSTIVMVTHSPAHADYAGRIVNMLDGRILQERRRAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 4e-31 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SLG_27120 YP_004835844.1 putative ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 2e-50 53
SLG_27120 YP_004835844.1 putative ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 1e-38 49
SLG_27120 YP_004835844.1 putative ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 2e-35 47
SLG_27120 YP_004835844.1 putative ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 3e-30 42
SLG_27120 YP_004835844.1 putative ABC transporter ATP-binding protein NC_012469.1.7686946. Protein 2e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SLG_27120 YP_004835844.1 putative ABC transporter ATP-binding protein VFG2059 Protein 8e-18 41